RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 DNAAF5Q86Y56 855 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 TPCN2Q8NHX9 752 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 PIK3R5Q8WYR1 880 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 EIF2AK1Q9BQI3 630 aaKnown RBP20.44■□□□□ 0.86
CPSF3-201ENST00000238112 POLR3CQ9BUI4 534 aaPredicted RBP20.44■□□□□ 0.86
CPSF3-201ENST00000238112 ISCUQ9H1K1 167 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 VAV3Q9UKW4 847 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 PCDHB13Q9Y5F0 798 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 PGRMC1O00264 195 aaKnown RBP20.44■□□□□ 0.86
CPSF3-201ENST00000238112 EYA4O95677 639 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 H2AFZP0C0S5 128 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 CIITAP33076 1130 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 PTPROQ16827 1216 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 H2AFVQ71UI9 128 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 PEX26Q7Z412 305 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 BBXQ8WY36 941 aaPredicted RBP20.44■□□□□ 0.86
CPSF3-201ENST00000238112 CALR3Q96L12 384 aaKnown RBP20.44■□□□□ 0.86
CPSF3-201ENST00000238112 SIX2Q9NPC8 291 aa20.44■□□□□ 0.86
CPSF3-201ENST00000238112 GAP43P17677 238 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 JAM2P57087 298 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 CUL1Q13616 776 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 SLC27A3Q5K4L6 730 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 KDM7AQ6ZMT4 941 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 MAATS1Q7Z4T9 603 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 SIAH1Q8IUQ4 282 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 KIAA0825Q8IV33 1275 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 EIF1ADQ8N9N8 165 aaKnown RBP20.43■□□□□ 0.86
CPSF3-201ENST00000238112 GMCL1P1Q8NEA9 526 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 SCFD2Q8WU76 684 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 GMCL1Q96IK5 515 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 POLD4Q9HCU8 107 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 ATP8B3O60423 1300 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 GTPBP10A4D1E9 387 aaKnown RBP20.43■□□□□ 0.86
CPSF3-201ENST00000238112 PPP1R12BO60237 982 aaPredicted RBP20.43■□□□□ 0.86
CPSF3-201ENST00000238112 GDF11O95390 407 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 NDUFB10O96000 172 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 NPR1P16066 1061 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 FERP16591 822 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 HOXA13P31271 388 aaPredicted RBP20.43■□□□□ 0.86
CPSF3-201ENST00000238112 HSPA9P38646 679 aaKnown RBP20.43■□□□□ 0.86
CPSF3-201ENST00000238112 TTC31Q49AM3 519 aaPredicted RBP20.43■□□□□ 0.86
CPSF3-201ENST00000238112 SYCE1Q8N0S2 351 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.43■□□□□ 0.867e-7■■□□□ 13.4
CPSF3-201ENST00000238112 OLFML3Q9NRN5 406 aa20.43■□□□□ 0.86
CPSF3-201ENST00000238112 AJAP1Q9UKB5 411 aaPredicted RBP20.43■□□□□ 0.86
CPSF3-201ENST00000238112 FAM13AO94988 1023 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 ERVK-9P63128 1117 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 KCNA1Q09470 495 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 ABCB5Q2M3G0 1257 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 TATDN1Q6P1N9 297 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 AP1M1Q9BXS5 423 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 RGL1Q9NZL6 768 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 FAM198AQ9UFP1 575 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 INTUQ9ULD6 942 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 NOC2LQ9Y3T9 749 aaKnown RBP20.42■□□□□ 0.86
CPSF3-201ENST00000238112 PCDHAC2Q9Y5I4 1007 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 KIF13BQ9NQT8 1826 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 A0A087WUV0 522 aaPredicted RBP20.42■□□□□ 0.86
CPSF3-201ENST00000238112 A0A0A6YYK5 440 aaPredicted RBP20.42■□□□□ 0.86
CPSF3-201ENST00000238112 GOLGA6L10A6NI86 522 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 NDUFAB1O14561 156 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 MMP14P50281 582 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 GJB7Q6PEY0 223 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 METTL13Q8N6R0 699 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 CYP2W1Q8TAV3 490 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 U2AF1L4Q8WU68 220 aaKnown RBP20.42■□□□□ 0.86
CPSF3-201ENST00000238112 ATP6V1G3Q96LB4 118 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 DBNDD1Q9H9R9 158 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 NENFQ9UMX5 172 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 PLAAQ9Y263 795 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 FAM169AQ9Y6X4 670 aa20.42■□□□□ 0.86
CPSF3-201ENST00000238112 KRIT1O00522 736 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 ZEB2O60315 1214 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 GFPT2O94808 682 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 NR1D1P20393 614 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 ALDH1B1P30837 517 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 STAT1P42224 750 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 RINT1Q6NUQ1 792 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 DAAM2Q86T65 1068 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 FAM186BQ8IYM0 893 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 KCTD17Q8N5Z5 321 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 IDI2Q9BXS1 227 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 SFI1A8K8P3 1242 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 HMGB1P1B2RPK0 211 aaPredicted RBP20.41■□□□□ 0.86
CPSF3-201ENST00000238112 CCDC188H7C350 402 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 EML1O00423 815 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 DDX3XO00571 662 aaKnown RBP eCLIP20.41■□□□□ 0.862e-7■□□□□ 9.6
CPSF3-201ENST00000238112 EIF3DO15371 548 aaKnown RBP eCLIP20.41■□□□□ 0.86
CPSF3-201ENST00000238112 BMP3P12645 472 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 TAL1P17542 331 aaPredicted RBP20.41■□□□□ 0.86
CPSF3-201ENST00000238112 PSMC2P35998 433 aaKnown RBP20.41■□□□□ 0.86
CPSF3-201ENST00000238112 CEP85LQ5SZL2 805 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 SH3BP5LQ7L8J4 393 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 PODNQ7Z5L7 613 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 TADA2BQ86TJ2 420 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 MYCT1Q8N699 235 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 C1orf131Q8NDD1 294 aaKnown RBP20.41■□□□□ 0.86
CPSF3-201ENST00000238112 RNPC3Q96LT9 517 aaKnown RBP20.41■□□□□ 0.86
CPSF3-201ENST00000238112 BCAS3Q9H6U6 928 aa20.41■□□□□ 0.86
CPSF3-201ENST00000238112 SUCLA2Q9P2R7 463 aaPredicted RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms