RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 CCDC12Q8WUD4 166 aaPredicted RBP15.84■□□□□ 0.13
LINC00339-211ENST00000641009 NECAB3Q96P71 396 aaPredicted RBP15.84■□□□□ 0.13
LINC00339-211ENST00000641009 SLC26A6Q9BXS9 759 aa15.84■□□□□ 0.13
LINC00339-211ENST00000641009 AGO3Q9H9G7 860 aaKnown RBP15.84■□□□□ 0.13
LINC00339-211ENST00000641009 IGKV6D-21A0A0A0MT36 114 aa15.83■□□□□ 0.12
LINC00339-211ENST00000641009 IPO5O00410 1097 aaKnown RBP15.83■□□□□ 0.12
LINC00339-211ENST00000641009 BACH1O14867 736 aa15.83■□□□□ 0.12
LINC00339-211ENST00000641009 DHX15O43143 795 aaKnown RBP15.83■□□□□ 0.12
LINC00339-211ENST00000641009 PDIA3P30101 505 aaKnown RBP15.83■□□□□ 0.12
LINC00339-211ENST00000641009 AKAP17AQ02040 695 aaKnown RBP15.83■□□□□ 0.12
LINC00339-211ENST00000641009 EPC2Q52LR7 807 aa15.83■□□□□ 0.12
LINC00339-211ENST00000641009 ABHD15Q6UXT9 468 aa15.83■□□□□ 0.12
LINC00339-211ENST00000641009 TSHZ1Q6ZSZ6 1077 aa15.83■□□□□ 0.12
LINC00339-211ENST00000641009 RUFY3Q7L099 469 aa15.83■□□□□ 0.12
LINC00339-211ENST00000641009 CCDC60Q8IWA6 550 aaPredicted RBP15.83■□□□□ 0.12
LINC00339-211ENST00000641009 TNPO1Q92973 898 aaKnown RBP15.83■□□□□ 0.12
LINC00339-211ENST00000641009 HLA-CQ95604 372 aa15.83■□□□□ 0.12
LINC00339-211ENST00000641009 COG5Q9UP83 839 aa15.83■□□□□ 0.12
LINC00339-211ENST00000641009 PCDHA2Q9Y5H9 948 aa15.83■□□□□ 0.12
LINC00339-211ENST00000641009 GNA11P29992 359 aa15.82■□□□□ 0.12
LINC00339-211ENST00000641009 CD52P31358 61 aa15.82■□□□□ 0.12
LINC00339-211ENST00000641009 TOB2Q14106 344 aaPredicted RBP15.82■□□□□ 0.12
LINC00339-211ENST00000641009 IER5Q5VY09 327 aa15.82■□□□□ 0.12
LINC00339-211ENST00000641009 ZNF577Q9BSK1 485 aa15.82■□□□□ 0.12
LINC00339-211ENST00000641009 RNF26Q9BY78 433 aaPredicted RBP15.82■□□□□ 0.12
LINC00339-211ENST00000641009 VPS54Q9P1Q0 977 aa15.82■□□□□ 0.12
LINC00339-211ENST00000641009 FNDC1Q4ZHG4 1894 aaPredicted RBP15.82■□□□□ 0.12
LINC00339-211ENST00000641009 ENPP3O14638 875 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 IFNAR1P17181 557 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 SLC26A2P50443 739 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 EVCP57679 992 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 SETQ01105 290 aaPredicted RBP15.81■□□□□ 0.12
LINC00339-211ENST00000641009 FAM160B1Q5W0V3 765 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 MCTP2Q6DN12 878 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 MTHFD1LQ6UB35 978 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 TMEM192Q8IY95 271 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 LINC01599Q8WXQ3 324 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 IL17RAQ96F46 866 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 SAMD11Q96NU1 681 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 LARP6Q9BRS8 491 aaKnown RBP15.81■□□□□ 0.12
LINC00339-211ENST00000641009 ZSWIM6Q9HCJ5 1215 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 ZNF302Q9NR11 478 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 TRPV2Q9Y5S1 764 aa15.81■□□□□ 0.12
LINC00339-211ENST00000641009 M0QZ92 97 aa15.8■□□□□ 0.12
LINC00339-211ENST00000641009 HBP1O60381 514 aa15.8■□□□□ 0.12
LINC00339-211ENST00000641009 RPLP2P05387 115 aaKnown RBP15.8■□□□□ 0.12
LINC00339-211ENST00000641009 ATP4AP20648 1035 aa15.8■□□□□ 0.12
LINC00339-211ENST00000641009 KLRC1P26715 233 aa15.8■□□□□ 0.12
LINC00339-211ENST00000641009 PRR16Q569H4 304 aa15.8■□□□□ 0.12
LINC00339-211ENST00000641009 SWSAP1Q6NVH7 229 aa15.8■□□□□ 0.12
LINC00339-211ENST00000641009 MIS18BP1Q6P0N0 1132 aa15.8■□□□□ 0.12
LINC00339-211ENST00000641009 PDXDC2PQ6P474 469 aa15.8■□□□□ 0.12
LINC00339-211ENST00000641009 CCDC148Q8NFR7 591 aa15.8■□□□□ 0.12
LINC00339-211ENST00000641009 ATP8B4Q8TF62 1192 aa15.8■□□□□ 0.12
LINC00339-211ENST00000641009 CELF4Q9BZC1 486 aaKnown RBP15.8■□□□□ 0.12
LINC00339-211ENST00000641009 UPF3BQ9BZI7 483 aaKnown RBP15.8■□□□□ 0.12
LINC00339-211ENST00000641009 ADGRA3Q8IWK6 1321 aa15.8■□□□□ 0.12
LINC00339-211ENST00000641009 IGSF9BQ9UPX0 1349 aa15.8■□□□□ 0.12
LINC00339-211ENST00000641009 PLXNA4Q9HCM2 1894 aa15.79■□□□□ 0.12
LINC00339-211ENST00000641009 SMIM35A0A1B0GVV1 85 aa15.79■□□□□ 0.12
LINC00339-211ENST00000641009 H3BNC9 293 aa15.79■□□□□ 0.12
LINC00339-211ENST00000641009 GPM6BQ13491 265 aa15.79■□□□□ 0.12
LINC00339-211ENST00000641009 TRMT1LQ7Z2T5 733 aaKnown RBP15.79■□□□□ 0.12
LINC00339-211ENST00000641009 RTN4RL1Q86UN2 441 aaPredicted RBP15.79■□□□□ 0.12
LINC00339-211ENST00000641009 FIBCD1Q8N539 461 aa15.79■□□□□ 0.12
LINC00339-211ENST00000641009 BICD2Q8TD16 824 aa15.79■□□□□ 0.12
LINC00339-211ENST00000641009 MRPL38Q96DV4 380 aaKnown RBP15.79■□□□□ 0.12
LINC00339-211ENST00000641009 RC3H2Q9HBD1 1191 aaKnown RBP15.79■□□□□ 0.12
LINC00339-211ENST00000641009 TBC1D22BQ9NU19 505 aa15.79■□□□□ 0.12
LINC00339-211ENST00000641009 PADI3Q9ULW8 664 aa15.79■□□□□ 0.12
LINC00339-211ENST00000641009 CYP46A1Q9Y6A2 500 aa15.79■□□□□ 0.12
LINC00339-211ENST00000641009 ZBTB42B2RXF5 422 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 EPB41L2O43491 1005 aaKnown RBP15.78■□□□□ 0.12
LINC00339-211ENST00000641009 EDIL3O43854 480 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 CIITAP33076 1130 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 KRT76Q01546 638 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 PAK2Q13177 524 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 ZNF746Q6NUN9 644 aaPredicted RBP15.78■□□□□ 0.12
LINC00339-211ENST00000641009 CKAP2LQ8IYA6 745 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 LENG9Q96B70 501 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 GINS2Q9Y248 185 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 SQORQ9Y6N5 450 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 COL1A2P08123 1366 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 NEFLP07196 543 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 LINC00271P0C7V0 271 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 CTNNB1P35222 781 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 NLRP5P59047 1200 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 SSRP1Q08945 709 aaKnown RBP15.78■□□□□ 0.12
LINC00339-211ENST00000641009 STK3Q13188 491 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 PTPROQ16827 1216 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 TMEM266Q2M3C6 531 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 ZNF484Q5JVG2 852 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 TRIM22Q8IYM9 498 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 NME8Q8N427 588 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 ZNF689Q96CS4 500 aaPredicted RBP15.78■□□□□ 0.12
LINC00339-211ENST00000641009 FTHL17Q9BXU8 183 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 UBE2ZQ9H832 354 aaPredicted RBP15.78■□□□□ 0.12
LINC00339-211ENST00000641009 CDHR5Q9HBB8 845 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 SH3GLB2Q9NR46 395 aa15.78■□□□□ 0.12
LINC00339-211ENST00000641009 TCEAL9Q9UHQ7 104 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms