RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SEC61A2Q9H9S3 476 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 COQ6Q9Y2Z9 468 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 TSC22D4Q9Y3Q8 395 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 FOXS1O43638 330 aa6.5□□□□□ -1.37
CD44-239ENST00000639002 PTGS1P23219 599 aa6.5□□□□□ -1.37
CD44-239ENST00000639002 USP10Q14694 798 aaKnown RBP6.5□□□□□ -1.37
CD44-239ENST00000639002 FAM47CQ5HY64 1035 aa6.5□□□□□ -1.37
CD44-239ENST00000639002 ZNF585AQ6P3V2 769 aa6.5□□□□□ -1.37
CD44-239ENST00000639002 OVCH1Q7RTY7 1134 aa6.5□□□□□ -1.37
CD44-239ENST00000639002 SPRED1Q7Z699 444 aa6.5□□□□□ -1.37
CD44-239ENST00000639002 FGD2Q7Z6J4 655 aa6.5□□□□□ -1.37
CD44-239ENST00000639002 CISD2Q8N5K1 135 aaKnown RBP6.5□□□□□ -1.37
CD44-239ENST00000639002 INCENPQ9NQS7 918 aa6.5□□□□□ -1.37
CD44-239ENST00000639002 GALNT8Q9NY28 637 aa6.5□□□□□ -1.37
CD44-239ENST00000639002 ARHGAP28Q9P2N2 729 aa6.5□□□□□ -1.37
CD44-239ENST00000639002 GSTA4O15217 222 aa6.49□□□□□ -1.37
CD44-239ENST00000639002 KCNQ2O43526 872 aa6.49□□□□□ -1.37
CD44-239ENST00000639002 ZNF623O75123 536 aa6.49□□□□□ -1.37
CD44-239ENST00000639002 HERVK_113P62684 666 aa6.49□□□□□ -1.37
CD44-239ENST00000639002 NOLC1Q14978 699 aaKnown RBP eCLIP6.49□□□□□ -1.37
CD44-239ENST00000639002 STILQ15468 1287 aa6.49□□□□□ -1.37
CD44-239ENST00000639002 TCTN3Q6NUS6 607 aa6.49□□□□□ -1.37
CD44-239ENST00000639002 LRSAM1Q6UWE0 723 aa6.49□□□□□ -1.37
CD44-239ENST00000639002 PMFBP1Q8TBY8 1022 aa6.49□□□□□ -1.37
CD44-239ENST00000639002 WNK4Q96J92 1243 aa6.49□□□□□ -1.37
CD44-239ENST00000639002 CARD11Q9BXL7 1154 aa6.49□□□□□ -1.37
CD44-239ENST00000639002 TCRBV16S1A1N1A0A5B0 115 aa6.48□□□□□ -1.37
CD44-239ENST00000639002 PRAMEF25A6NGN4 478 aa6.48□□□□□ -1.37
CD44-239ENST00000639002 RASSF10A6NK89 507 aa6.48□□□□□ -1.37
CD44-239ENST00000639002 CUTAO60888 179 aa6.48□□□□□ -1.37
CD44-239ENST00000639002 EFCAB14O75071 495 aa6.48□□□□□ -1.37
CD44-239ENST00000639002 ZXDAP98168 799 aa6.48□□□□□ -1.37
CD44-239ENST00000639002 TBR1Q16650 682 aa6.48□□□□□ -1.37
CD44-239ENST00000639002 RNF151Q2KHN1 245 aa6.48□□□□□ -1.37
CD44-239ENST00000639002 DPP8Q6V1X1 898 aaPredicted RBP6.48□□□□□ -1.37
CD44-239ENST00000639002 LARP4Q71RC2 724 aaKnown RBP eCLIP6.48□□□□□ -1.37
CD44-239ENST00000639002 SH3RF3Q8TEJ3 882 aaPredicted RBP6.48□□□□□ -1.37
CD44-239ENST00000639002 THAP3Q8WTV1 239 aaPredicted RBP6.48□□□□□ -1.37
CD44-239ENST00000639002 DLG3Q92796 817 aa6.48□□□□□ -1.37
CD44-239ENST00000639002 NEIL1Q96FI4 390 aaPredicted RBP6.48□□□□□ -1.37
CD44-239ENST00000639002 MAGEB10Q96LZ2 347 aaPredicted RBP6.48□□□□□ -1.37
CD44-239ENST00000639002 LMF1Q96S06 567 aa6.48□□□□□ -1.37
CD44-239ENST00000639002 CELF4Q9BZC1 486 aaKnown RBP6.48□□□□□ -1.37
CD44-239ENST00000639002 ZDHHC5Q9C0B5 715 aa6.48□□□□□ -1.37
CD44-239ENST00000639002 TRIM39Q9HCM9 518 aa6.48□□□□□ -1.37
CD44-239ENST00000639002 MATN2O00339 956 aa6.47□□□□□ -1.37
CD44-239ENST00000639002 SCDO00767 359 aa6.47□□□□□ -1.37
CD44-239ENST00000639002 MMEP08473 750 aa6.47□□□□□ -1.37
CD44-239ENST00000639002 KANK2Q63ZY3 851 aa6.47□□□□□ -1.37
CD44-239ENST00000639002 BRAPQ7Z569 592 aa6.47□□□□□ -1.37
CD44-239ENST00000639002 TAX1BP1Q86VP1 789 aa6.47□□□□□ -1.37
CD44-239ENST00000639002 LRRC37BQ96QE4 947 aa6.47□□□□□ -1.37
CD44-239ENST00000639002 UCKL1Q9NWZ5 548 aa6.47□□□□□ -1.37
CD44-239ENST00000639002 PTCH2Q9Y6C5 1203 aa6.47□□□□□ -1.37
CD44-239ENST00000639002 ZBTB48P10074 688 aaPredicted RBP6.46□□□□□ -1.38
CD44-239ENST00000639002 ADCY8P40145 1251 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 ETV4P43268 484 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 RRADP55042 308 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 WDR72Q3MJ13 1102 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 C2orf27AQ580R0 203 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 EP400NLQ6ZTU2 488 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 CXXC5Q7LFL8 322 aaKnown RBP6.46□□□□□ -1.38
CD44-239ENST00000639002 PALM2Q8IXS6 379 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 Q8N1X5 172 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 ZSWIM2Q8NEG5 633 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 ASB15Q8WXK1 588 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 CLUHP3Q96NS8 147 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 BTBD2Q9BX70 525 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 MRPL4Q9BYD3 311 aaKnown RBP6.46□□□□□ -1.38
CD44-239ENST00000639002 DEF6Q9H4E7 631 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 B3GALT1Q9Y5Z6 326 aa6.46□□□□□ -1.38
CD44-239ENST00000639002 CCDC163A0A0D9SF12 145 aa6.45□□□□□ -1.38
CD44-239ENST00000639002 ECE1P42892 770 aa6.45□□□□□ -1.38
CD44-239ENST00000639002 CD83Q01151 205 aa6.45□□□□□ -1.38
CD44-239ENST00000639002 EIF4HQ15056 248 aaKnown RBP6.45□□□□□ -1.38
CD44-239ENST00000639002 SOGA3Q5TF21 947 aa6.45□□□□□ -1.38
CD44-239ENST00000639002 TRIM68Q6AZZ1 485 aa6.45□□□□□ -1.38
CD44-239ENST00000639002 NCOA5Q9HCD5 579 aaKnown RBP6.45□□□□□ -1.38
CD44-239ENST00000639002 KCNH7Q9NS40 1196 aa6.45□□□□□ -1.38
CD44-239ENST00000639002 SFMBT1Q9UHJ3 866 aa6.45□□□□□ -1.38
CD44-239ENST00000639002 CDC42EP3Q9UKI2 254 aa6.45□□□□□ -1.38
CD44-239ENST00000639002 ZFR2Q9UPR6 939 aaKnown RBP6.45□□□□□ -1.38
CD44-239ENST00000639002 AKAP8O43823 692 aaKnown RBP6.44□□□□□ -1.38
CD44-239ENST00000639002 SDHAP31040 664 aa6.44□□□□□ -1.38
CD44-239ENST00000639002 SELENOPP49908 381 aa6.44□□□□□ -1.38
CD44-239ENST00000639002 KCNQ1P51787 676 aa6.44□□□□□ -1.38
CD44-239ENST00000639002 DUSP8Q13202 625 aa6.44□□□□□ -1.38
CD44-239ENST00000639002 CATSPEREQ5SY80 951 aa6.44□□□□□ -1.38
CD44-239ENST00000639002 IFNL2Q8IZJ0 200 aa6.44□□□□□ -1.38
CD44-239ENST00000639002 IGSF22Q8N9C0 903 aa6.44□□□□□ -1.38
CD44-239ENST00000639002 CFHR4Q92496 578 aa6.44□□□□□ -1.38
CD44-239ENST00000639002 GBP4Q96PP9 640 aa6.44□□□□□ -1.38
CD44-239ENST00000639002 DNAJC2Q99543 621 aaKnown RBP6.44□□□□□ -1.38
CD44-239ENST00000639002 KIAA1683Q9H0B3 1180 aa6.44□□□□□ -1.38
CD44-239ENST00000639002 TESMINQ9Y4I5 508 aa6.44□□□□□ -1.38
CD44-239ENST00000639002 PRAMEF22A3QJZ6 481 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 GOLGA6L22H0YM25 854 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 MECP2P51608 486 aaKnown RBP6.43□□□□□ -1.38
CD44-239ENST00000639002 NFYCQ13952 458 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 TMEM177Q53S58 311 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms