RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 C9orf50Q5SZB4 431 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 MCTP1Q6DN14 999 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 POTEBQ6S5H4 581 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 B3GNT9Q6UX72 402 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 C16orf59Q7L2K0 433 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 TRMT1LQ7Z2T5 733 aaKnown RBP11.1□□□□□ -0.63
CLN3-261ENST00000637686 MIER3Q7Z3K6 550 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 SERINC5Q86VE9 423 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 CKAP2LQ8IYA6 745 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 CCDC155Q8N6L0 562 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 TMEM87AQ8NBN3 555 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 ZNF396Q96N95 335 aaPredicted RBP11.1□□□□□ -0.63
CLN3-261ENST00000637686 SCAND2PQ9GZW5 306 aaPredicted RBP11.1□□□□□ -0.63
CLN3-261ENST00000637686 IL23AQ9NPF7 189 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 CFAP45Q9UL16 551 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 MAFBQ9Y5Q3 323 aaPredicted RBP11.1□□□□□ -0.63
CLN3-261ENST00000637686 A0A1W2PPC1 479 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 RRN3P2A6NIE6 340 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 GOLGA6L22H0YM25 854 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 EML1O00423 815 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 HBP1O60381 514 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 BMP15O95972 392 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 SELPP16109 830 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 THPOP40225 353 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 KRT85P78386 507 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 RBL2Q08999 1139 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 PPP2R5CQ13362 524 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 UGCGQ16739 394 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 MARCH8Q5T0T0 291 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 ZNF618Q5T7W0 954 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 RUFY4Q6ZNE9 571 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 LRRC8DQ7L1W4 858 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 DEFB128Q7Z7B8 93 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 SLFN12Q8IYM2 578 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 RDM1Q8NG50 284 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 ATP8B4Q8TF62 1192 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 TRAPPC12Q8WVT3 735 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 ZBTB10Q96DT7 871 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.09□□□□□ -0.63
CLN3-261ENST00000637686 TMEM60Q9H2L4 133 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 TUBE1Q9UJT0 475 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 VAV3Q9UKW4 847 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 RANBP2P49792 3224 aaKnown RBP11.09□□□□□ -0.63
CLN3-261ENST00000637686 KAT6AQ92794 2004 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 IGSF9BQ9UPX0 1349 aa11.09□□□□□ -0.63
CLN3-261ENST00000637686 MBLAC1A4D2B0 266 aaPredicted RBP11.08□□□□□ -0.64
CLN3-261ENST00000637686 RBAK-RBAKDNI3L0D1 243 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 ZNF862O60290 1169 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 NEMFO60524 1076 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 TXKP42681 527 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 TOB1P50616 345 aaPredicted RBP11.08□□□□□ -0.64
CLN3-261ENST00000637686 NBR1Q14596 966 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 GPNMBQ14956 572 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 TTC38Q5R3I4 469 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 TMEM240Q5SV17 173 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 TRAF7Q6Q0C0 670 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 ZNF365Q70YC5 407 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 FERMT3Q86UX7 667 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 RPUSD2Q8IZ73 545 aaKnown RBP11.08□□□□□ -0.64
CLN3-261ENST00000637686 BBXQ8WY36 941 aaPredicted RBP11.08□□□□□ -0.64
CLN3-261ENST00000637686 VWCEQ96DN2 955 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 MTMR9Q96QG7 549 aa11.08□□□□□ -0.64
CLN3-261ENST00000637686 NOL7Q9UMY1 257 aaKnown RBP11.08□□□□□ -0.64
CLN3-261ENST00000637686 MYH9P35579 1960 aaKnown RBP11.07□□□□□ -0.64
CLN3-261ENST00000637686 DDX11L8A8MPP1 907 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 RSPH10B2B2RC85 870 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 ZBTB42B2RXF5 422 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 YEATS4O95619 227 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 FGBP02675 491 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 OATP04181 439 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 RSPH10BP0C881 870 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 KLRC1P26715 233 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 RFC2P35250 354 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 NASPP49321 788 aaPredicted RBP11.07□□□□□ -0.64
CLN3-261ENST00000637686 PRKCEQ02156 737 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 ZNF484Q5JVG2 852 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 NCAPH2Q6IBW4 605 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 TAF2Q6P1X5 1199 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 MTHFD1LQ6UB35 978 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 BANK1Q8NDB2 785 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 DNAJB3Q8WWF6 145 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 RNPC3Q96LT9 517 aaKnown RBP11.07□□□□□ -0.64
CLN3-261ENST00000637686 FTOQ9C0B1 505 aaKnown RBP eCLIP11.07□□□□□ -0.64
CLN3-261ENST00000637686 TTC12Q9H892 705 aaPredicted RBP11.07□□□□□ -0.64
CLN3-261ENST00000637686 NRBP2Q9NSY0 501 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 PCDHA12Q9UN75 941 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 CEP131Q9UPN4 1083 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 PCDHA2Q9Y5H9 948 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 SCN5AQ14524 2016 aa11.07□□□□□ -0.64
CLN3-261ENST00000637686 COL1A2P08123 1366 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 WDR81Q562E7 1941 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 NBNO60934 754 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 CAND2O75155 1236 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 P4HBP07237 508 aaKnown RBP11.06□□□□□ -0.64
CLN3-261ENST00000637686 PFKMP08237 780 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 CTSHP09668 335 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 OR52Z1P0C646 297 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 PSMC5P62195 406 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 SPIRE1Q08AE8 756 aa11.06□□□□□ -0.64
CLN3-261ENST00000637686 MBTPS1Q14703 1052 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms