RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 C9orf50Q5SZB4 431 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 VAV3Q9UKW4 847 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 PCDHA12Q9UN75 941 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 COL1A2P08123 1366 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 FGBP02675 491 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 RPLP2P05387 115 aaKnown RBP23.31■■□□□ 1.32
CLN3-240ENST00000631023 ACRP10323 421 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 PDCP20941 246 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 C16orf59Q7L2K0 433 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 RSPH3Q86UC2 560 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 HSCBQ8IWL3 235 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 WNT8BQ93098 351 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.31■■□□□ 1.323e-6■□□□□ 10.1
CLN3-240ENST00000631023 NRBP2Q9NSY0 501 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 CEP131Q9UPN4 1083 aa23.31■■□□□ 1.32
CLN3-240ENST00000631023 LOXHD1Q8IVV2 1947 aa23.3■■□□□ 1.32
CLN3-240ENST00000631023 ATP4AP20648 1035 aa23.3■■□□□ 1.32
CLN3-240ENST00000631023 LRIT3Q3SXY7 679 aa23.3■■□□□ 1.32
CLN3-240ENST00000631023 TTC38Q5R3I4 469 aa23.3■■□□□ 1.32
CLN3-240ENST00000631023 TMEM240Q5SV17 173 aa23.3■■□□□ 1.32
CLN3-240ENST00000631023 MARCH8Q5T0T0 291 aa23.3■■□□□ 1.32
CLN3-240ENST00000631023 ZNF618Q5T7W0 954 aa23.3■■□□□ 1.32
CLN3-240ENST00000631023 ZNF365Q70YC5 407 aa23.3■■□□□ 1.32
CLN3-240ENST00000631023 DEFB128Q7Z7B8 93 aa23.3■■□□□ 1.32
CLN3-240ENST00000631023 RNPC3Q96LT9 517 aaKnown RBP23.3■■□□□ 1.32
CLN3-240ENST00000631023 MTIF3Q9H2K0 278 aaKnown RBP23.3■■□□□ 1.32
CLN3-240ENST00000631023 RSPH10B2B2RC85 870 aa23.29■■□□□ 1.32
CLN3-240ENST00000631023 WNT7AO00755 349 aa23.29■■□□□ 1.32
CLN3-240ENST00000631023 RSPH10BP0C881 870 aa23.29■■□□□ 1.32
CLN3-240ENST00000631023 ZNF174Q15697 407 aa23.29■■□□□ 1.32
CLN3-240ENST00000631023 TRMT1LQ7Z2T5 733 aaKnown RBP23.29■■□□□ 1.32
CLN3-240ENST00000631023 RPAINQ86UA6 219 aa23.29■■□□□ 1.32
CLN3-240ENST00000631023 FTOQ9C0B1 505 aaKnown RBP eCLIP23.29■■□□□ 1.32
CLN3-240ENST00000631023 PCDHA2Q9Y5H9 948 aa23.29■■□□□ 1.32
CLN3-240ENST00000631023 DKC1O60832 514 aaKnown RBP eCLIP23.28■■□□□ 1.32
CLN3-240ENST00000631023 TXKP42681 527 aa23.28■■□□□ 1.32
CLN3-240ENST00000631023 MTMR9Q96QG7 549 aa23.28■■□□□ 1.32
CLN3-240ENST00000631023 TTC12Q9H892 705 aaPredicted RBP23.28■■□□□ 1.32
CLN3-240ENST00000631023 EML1O00423 815 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 ZNF862O60290 1169 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 OATP04181 439 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 ACTN1P12814 892 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 PSMC5P62195 406 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 EPHA7Q15375 998 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 NCAPH2Q6IBW4 605 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 MTHFD1LQ6UB35 978 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 TRAPPC12Q8WVT3 735 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 P4HBP07237 508 aaKnown RBP23.27■■□□□ 1.32
CLN3-240ENST00000631023 KLRC1P26715 233 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 PRKCEQ02156 737 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 UGCGQ16739 394 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 RUFY4Q6ZNE9 571 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 HERVK_113Q902F9 699 aa23.27■■□□□ 1.32
CLN3-240ENST00000631023 LAMA3Q16787 3333 aa23.26■■□□□ 1.31
CLN3-240ENST00000631023 QARSP47897 775 aaKnown RBP23.26■■□□□ 1.31
CLN3-240ENST00000631023 SPIRE1Q08AE8 756 aa23.26■■□□□ 1.31
CLN3-240ENST00000631023 RILPL1Q5EBL4 403 aa23.26■■□□□ 1.31
CLN3-240ENST00000631023 XKR3Q5GH77 459 aa23.26■■□□□ 1.31
CLN3-240ENST00000631023 TRAF7Q6Q0C0 670 aa23.26■■□□□ 1.31
CLN3-240ENST00000631023 BANK1Q8NDB2 785 aa23.26■■□□□ 1.31
CLN3-240ENST00000631023 DNAJB3Q8WWF6 145 aa23.26■■□□□ 1.31
CLN3-240ENST00000631023 TMEM60Q9H2L4 133 aa23.26■■□□□ 1.31
CLN3-240ENST00000631023 SMIM35A0A1B0GVV1 85 aa23.25■■□□□ 1.31
CLN3-240ENST00000631023 ZBTB42B2RXF5 422 aa23.25■■□□□ 1.31
CLN3-240ENST00000631023 MAGEB2O15479 319 aa23.25■■□□□ 1.31
CLN3-240ENST00000631023 OR52Z1P0C646 297 aa23.25■■□□□ 1.31
CLN3-240ENST00000631023 FAM26DQ5JW98 314 aa23.25■■□□□ 1.31
CLN3-240ENST00000631023 IER5Q5VY09 327 aa23.25■■□□□ 1.31
CLN3-240ENST00000631023 OTOP2Q7RTS6 562 aa23.25■■□□□ 1.31
CLN3-240ENST00000631023 NME8Q8N427 588 aa23.25■■□□□ 1.31
CLN3-240ENST00000631023 LAMA2P24043 3122 aaKnown RBP23.25■■□□□ 1.31
CLN3-240ENST00000631023 HSP90AA1P07900 732 aaKnown RBP23.24■■□□□ 1.31
CLN3-240ENST00000631023 CTSHP09668 335 aa23.24■■□□□ 1.31
CLN3-240ENST00000631023 TOB1P50616 345 aaPredicted RBP23.24■■□□□ 1.31
CLN3-240ENST00000631023 VWCEQ96DN2 955 aa23.24■■□□□ 1.31
CLN3-240ENST00000631023 FAM49AQ9H0Q0 323 aaPredicted RBP23.24■■□□□ 1.31
CLN3-240ENST00000631023 SEPT9Q9UHD8 586 aaPredicted RBP23.24■■□□□ 1.31
CLN3-240ENST00000631023 VPS37CA5D8V6 355 aaPredicted RBP23.23■■□□□ 1.31
CLN3-240ENST00000631023 M0QZ92 97 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 NBNO60934 754 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 CXCL10P02778 98 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 FXR1P51114 621 aaKnown RBP eCLIP23.23■■□□□ 1.31
CLN3-240ENST00000631023 ZBTB10Q96DT7 871 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 NIFKQ9BYG3 293 aaKnown RBP23.23■■□□□ 1.31
CLN3-240ENST00000631023 FOXD4L1Q9NU39 408 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 DDX11L8A8MPP1 907 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 NBR1Q14596 966 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 GPNMBQ14956 572 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 RASIP1Q5U651 963 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 CNKSR3Q6P9H4 555 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 NEK9Q8TD19 979 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 ZSWIM4Q9H7M6 989 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 PCDHB6Q9Y5E3 794 aa23.23■■□□□ 1.31
CLN3-240ENST00000631023 LAD1O00515 517 aa23.22■■□□□ 1.31
CLN3-240ENST00000631023 TMOD1P28289 359 aa23.22■■□□□ 1.31
CLN3-240ENST00000631023 MRPS6P82932 125 aaKnown RBP23.22■■□□□ 1.31
CLN3-240ENST00000631023 MBTPS1Q14703 1052 aa23.22■■□□□ 1.31
CLN3-240ENST00000631023 TMEM266Q2M3C6 531 aa23.22■■□□□ 1.31
CLN3-240ENST00000631023 BRAPQ7Z569 592 aa23.22■■□□□ 1.31
CLN3-240ENST00000631023 C4orf19Q8IY42 314 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms