RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 ADCY7P51828 1080 aa27.14■■□□□ 1.94
CPSF1-214ENST00000622776 FUT2Q10981 343 aa27.14■■□□□ 1.94
CPSF1-214ENST00000622776 ITGB3BPQ13352 177 aaPredicted RBP27.14■■□□□ 1.94
CPSF1-214ENST00000622776 RNF20Q5VTR2 975 aa27.14■■□□□ 1.94
CPSF1-214ENST00000622776 NPAS4Q8IUM7 802 aa27.14■■□□□ 1.94
CPSF1-214ENST00000622776 CMTR2Q8IYT2 770 aaKnown RBP27.14■■□□□ 1.94
CPSF1-214ENST00000622776 ANO3Q9BYT9 981 aa27.14■■□□□ 1.94
CPSF1-214ENST00000622776 CELF4Q9BZC1 486 aaKnown RBP27.14■■□□□ 1.94
CPSF1-214ENST00000622776 AGO4Q9HCK5 861 aaKnown RBP27.14■■□□□ 1.94
CPSF1-214ENST00000622776 ALG13Q9NP73 1137 aaKnown RBP27.14■■□□□ 1.94
CPSF1-214ENST00000622776 PLAGL2Q9UPG8 496 aa27.14■■□□□ 1.94
CPSF1-214ENST00000622776 MRPL42Q9Y6G3 142 aaKnown RBP27.14■■□□□ 1.94
CPSF1-214ENST00000622776 V9GY48 417 aaPredicted RBP27.14■■□□□ 1.94
CPSF1-214ENST00000622776 IGSF9BQ9UPX0 1349 aa27.14■■□□□ 1.93
CPSF1-214ENST00000622776 CSPG5O95196 566 aa27.13■■□□□ 1.93
CPSF1-214ENST00000622776 ATG7O95352 703 aa27.13■■□□□ 1.93
CPSF1-214ENST00000622776 DLX2Q07687 328 aaPredicted RBP27.13■■□□□ 1.93
CPSF1-214ENST00000622776 RTN1Q16799 776 aa27.13■■□□□ 1.93
CPSF1-214ENST00000622776 ADHFE1Q8IWW8 467 aa27.13■■□□□ 1.93
CPSF1-214ENST00000622776 P2RX5Q93086 422 aa27.13■■□□□ 1.93
CPSF1-214ENST00000622776 NEK1Q96PY6 1258 aa27.13■■□□□ 1.93
CPSF1-214ENST00000622776 BRPF3Q9ULD4 1205 aa27.13■■□□□ 1.93
CPSF1-214ENST00000622776 SMIM35A0A1B0GVV1 85 aa27.12■■□□□ 1.93
CPSF1-214ENST00000622776 C19orf67A6NJJ6 358 aa27.12■■□□□ 1.93
CPSF1-214ENST00000622776 MEIS1O00470 390 aa27.12■■□□□ 1.93
CPSF1-214ENST00000622776 DCXO43602 365 aa27.12■■□□□ 1.93
CPSF1-214ENST00000622776 STAG3L1P0CL83 205 aa27.12■■□□□ 1.93
CPSF1-214ENST00000622776 EXOSC10Q01780 885 aaKnown RBP27.12■■□□□ 1.93
CPSF1-214ENST00000622776 PAK2Q13177 524 aa27.12■■□□□ 1.93
CPSF1-214ENST00000622776 CAMK1Q14012 370 aa27.12■■□□□ 1.93
CPSF1-214ENST00000622776 NME8Q8N427 588 aa27.12■■□□□ 1.93
CPSF1-214ENST00000622776 TCEANC2Q96MN5 208 aa27.12■■□□□ 1.93
CPSF1-214ENST00000622776 KDM3AQ9Y4C1 1321 aa27.12■■□□□ 1.93
CPSF1-214ENST00000622776 LOXHD1Q8IVV2 1947 aa27.12■■□□□ 1.93
CPSF1-214ENST00000622776 SMCO2A6NFE2 343 aa27.11■■□□□ 1.93
CPSF1-214ENST00000622776 STXBP3O00186 592 aa27.11■■□□□ 1.93
CPSF1-214ENST00000622776 ZBTB43O43298 467 aa27.11■■□□□ 1.93
CPSF1-214ENST00000622776 SCG2P13521 617 aa27.11■■□□□ 1.93
CPSF1-214ENST00000622776 GTF2F1P35269 517 aaKnown RBP eCLIP27.11■■□□□ 1.93
CPSF1-214ENST00000622776 SREBF1P36956 1147 aa27.11■■□□□ 1.93
CPSF1-214ENST00000622776 SLC26A2P50443 739 aa27.11■■□□□ 1.93
CPSF1-214ENST00000622776 KRT76Q01546 638 aa27.11■■□□□ 1.93
CPSF1-214ENST00000622776 CLUL1Q15846 466 aa27.11■■□□□ 1.93
CPSF1-214ENST00000622776 NAALADL2Q58DX5 795 aa27.11■■□□□ 1.93
CPSF1-214ENST00000622776 MTHFD1LQ6UB35 978 aa27.11■■□□□ 1.93
CPSF1-214ENST00000622776 IGFLR1Q9H665 355 aa27.11■■□□□ 1.93
CPSF1-214ENST00000622776 TMEM260Q9NX78 707 aa27.11■■□□□ 1.93
CPSF1-214ENST00000622776 IGKV6D-21A0A0A0MT36 114 aa27.1■■□□□ 1.93
CPSF1-214ENST00000622776 hCG_1984214I3L0E3 225 aa27.1■■□□□ 1.93
CPSF1-214ENST00000622776 ITGB1P05556 798 aa27.1■■□□□ 1.93
CPSF1-214ENST00000622776 AP3B2Q13367 1082 aa27.1■■□□□ 1.93
CPSF1-214ENST00000622776 SMAD2Q15796 467 aaKnown RBP27.1■■□□□ 1.93
CPSF1-214ENST00000622776 PAN2Q504Q3 1202 aaKnown RBP27.1■■□□□ 1.93
CPSF1-214ENST00000622776 DHX32Q7L7V1 743 aaKnown RBP27.1■■□□□ 1.93
CPSF1-214ENST00000622776 ZNF713Q8N859 430 aaPredicted RBP27.1■■□□□ 1.93
CPSF1-214ENST00000622776 GLT8D2Q9H1C3 349 aa27.1■■□□□ 1.93
CPSF1-214ENST00000622776 BARHL2Q9NY43 387 aa27.1■■□□□ 1.93
CPSF1-214ENST00000622776 MBTPS2O43462 519 aa27.09■■□□□ 1.93
CPSF1-214ENST00000622776 TBX10O75333 385 aa27.09■■□□□ 1.93
CPSF1-214ENST00000622776 CCNE2O96020 404 aa27.09■■□□□ 1.93
CPSF1-214ENST00000622776 KLRC1P26715 233 aa27.09■■□□□ 1.93
CPSF1-214ENST00000622776 ZNF76P36508 570 aa27.09■■□□□ 1.93
CPSF1-214ENST00000622776 NIPA1Q7RTP0 329 aa27.09■■□□□ 1.93
CPSF1-214ENST00000622776 SPPL3Q8TCT6 385 aa27.09■■□□□ 1.93
CPSF1-214ENST00000622776 UIMC1Q96RL1 719 aa27.09■■□□□ 1.93
CPSF1-214ENST00000622776 TMX1Q9H3N1 280 aa27.09■■□□□ 1.93
CPSF1-214ENST00000622776 GOLGA8AA7E2F4 631 aa27.08■■□□□ 1.93
CPSF1-214ENST00000622776 GOLGA8BA8MQT2 603 aa27.08■■□□□ 1.93
CPSF1-214ENST00000622776 DDX39AO00148 427 aaKnown RBP27.08■■□□□ 1.93
CPSF1-214ENST00000622776 BACH1O14867 736 aa27.08■■□□□ 1.93
CPSF1-214ENST00000622776 LINC01565O15544 149 aa27.08■■□□□ 1.93
CPSF1-214ENST00000622776 HBP1O60381 514 aa27.08■■□□□ 1.93
CPSF1-214ENST00000622776 DNAJB1P25685 340 aa27.08■■□□□ 1.93
CPSF1-214ENST00000622776 CLK2P49760 499 aaKnown RBP27.08■■□□□ 1.93
CPSF1-214ENST00000622776 ADAM15Q13444 863 aa27.08■■□□□ 1.93
CPSF1-214ENST00000622776 CSPP1Q1MSJ5 1256 aa27.08■■□□□ 1.93
CPSF1-214ENST00000622776 TMEM266Q2M3C6 531 aa27.08■■□□□ 1.93
CPSF1-214ENST00000622776 ABHD15Q6UXT9 468 aa27.08■■□□□ 1.93
CPSF1-214ENST00000622776 KLHL23Q8NBE8 558 aa27.08■■□□□ 1.93
CPSF1-214ENST00000622776 PPP2R3CQ969Q6 453 aa27.08■■□□□ 1.93
CPSF1-214ENST00000622776 FAM217BQ9NTX9 383 aaPredicted RBP27.08■■□□□ 1.93
CPSF1-214ENST00000622776 IRS1P35568 1242 aa27.07■■□□□ 1.92
CPSF1-214ENST00000622776 GATMP50440 423 aa27.07■■□□□ 1.92
CPSF1-214ENST00000622776 NFX1Q12986 1120 aaKnown RBP27.07■■□□□ 1.92
CPSF1-214ENST00000622776 SMAD4Q13485 552 aaKnown RBP27.07■■□□□ 1.92
CPSF1-214ENST00000622776 TSGA10IPQ3SY00 556 aa27.07■■□□□ 1.92
CPSF1-214ENST00000622776 BMP2KLQ5H9B9 411 aa27.07■■□□□ 1.92
CPSF1-214ENST00000622776 FAM160B1Q5W0V3 765 aa27.07■■□□□ 1.92
CPSF1-214ENST00000622776 RASEFQ8IZ41 740 aa27.07■■□□□ 1.92
CPSF1-214ENST00000622776 ATP8B4Q8TF62 1192 aa27.07■■□□□ 1.92
CPSF1-214ENST00000622776 UPF3BQ9BZI7 483 aaKnown RBP27.07■■□□□ 1.92
CPSF1-214ENST00000622776 CD207Q9UJ71 328 aa27.07■■□□□ 1.92
CPSF1-214ENST00000622776 LRFN2Q9ULH4 789 aa27.07■■□□□ 1.92
CPSF1-214ENST00000622776 GINS2Q9Y248 185 aa27.07■■□□□ 1.92
CPSF1-214ENST00000622776 C5orf42Q9H799 3197 aa27.07■■□□□ 1.92
CPSF1-214ENST00000622776 KLF18A0A0U1RQI7 1052 aa27.06■■□□□ 1.92
CPSF1-214ENST00000622776 CDC27P30260 824 aa27.06■■□□□ 1.92
CPSF1-214ENST00000622776 ADCK5Q3MIX3 580 aa27.06■■□□□ 1.92
CPSF1-214ENST00000622776 PLA2G4DQ86XP0 818 aa27.06■■□□□ 1.92
CPSF1-214ENST00000622776 CCDC60Q8IWA6 550 aaPredicted RBP27.06■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms