RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 HYIQ5T013 277 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 SH2D3CQ8N5H7 860 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 RNF10Q8N5U6 811 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 DCAF4Q8WV16 495 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 NAP1L4Q99733 375 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 SEPT11Q9NVA2 429 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 RRP15Q9Y3B9 282 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 RABGAP1Q9Y3P9 1069 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 TCP10L2B9ZVM9 353 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 DDX39AO00148 427 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 CEP104O60308 925 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 ECE2O60344 883 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 NR3C1P04150 777 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 BMP3P12645 472 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 PON1P27169 355 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 ATP1A2P50993 1020 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 MSL3Q8N5Y2 521 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 ZDHHC15Q96MV8 337 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 CSRNP1Q96S65 589 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 EIF2AK1Q9BQI3 630 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 CLRN2A0PK11 232 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 GRID2IPA4D2P6 1211 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 HSF2BPO75031 334 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 IVLP07476 585 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 RPA1P27694 616 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 HLTFQ14527 1009 aaKnown RBP eCLIP14.16□□□□□ -0.142e-7■□□□□ 8.5
CCDC88A-214ENST00000621814 AOC3Q16853 763 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 RBM26Q5T8P6 1007 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 SYT2Q8N9I0 419 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 LENG9Q96B70 501 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 ARL8AQ96BM9 186 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 CCDC43Q96MW1 224 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 EDEM3Q9BZQ6 932 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 GANQ9H2C0 597 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 GCNT4Q9P109 453 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 NYAP2Q9P242 653 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 AJAP1Q9UKB5 411 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 MYH7BA7E2Y1 1941 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 A0A1W2PRG0 241 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 CALUO43852 315 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 GFPT2O94808 682 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 EPHB4P54760 987 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 RRP1BQ14684 758 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 COG2Q14746 738 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 RBM46Q8TBY0 533 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 GLT8D2Q9H1C3 349 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 KLRG2A4D1S0 409 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 FAM13AO94988 1023 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 EPB41P11171 864 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 AP3B2Q13367 1082 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 RPS6KA1Q15418 735 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 SLC27A3Q5K4L6 730 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 ALKBH5Q6P6C2 394 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 TMEM179Q6ZVK1 233 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 PODNQ7Z5L7 613 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 IFT20Q8IY31 132 aa14.16□□□□□ -0.14
CCDC88A-214ENST00000621814 CHRNA5P30532 468 aa14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 CYP2J2P51589 502 aa14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 TBC1D10BQ4KMP7 808 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 U2AF1L4Q8WU68 220 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 DYDC2Q96IM9 177 aa14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 TRPC5Q9UL62 973 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 SCAF8Q9UPN6 1271 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 RBAK-RBAKDNI3L0D1 243 aa14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 ABCB4P21439 1286 aa14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 EDRF1Q3B7T1 1238 aa14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 MEI1Q5TIA1 1274 aa14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 IRF2BP2Q7Z5L9 587 aa14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 SRLQ86TD4 932 aa14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 NLGN1Q8N2Q7 840 aa14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 SYN2Q92777 582 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 PRMT6Q96LA8 375 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 SH2D3AQ9BRG2 576 aa14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 AIPL1Q9NZN9 384 aa14.15□□□□□ -0.14
CCDC88A-214ENST00000621814 ADAMTSL1Q8N6G6 1762 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 CYP3A7-CYP3A51PA0A087WV96 503 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 ZEB2O60315 1214 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 CYP3A7P24462 503 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 PDE6BP35913 854 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 ADAT2Q7Z6V5 191 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 DDX42Q86XP3 938 aaKnown RBP eCLIP14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 ACER1Q8TDN7 264 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 MKL1Q969V6 931 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 MASTLQ96GX5 879 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 ZIM3Q96PE6 472 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 PRR12Q9ULL5 1215 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 NHSQ6T4R5 1651 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 TAF1LQ8IZX4 1826 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 GNGT1P63211 74 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 FEZ2Q9UHY8 353 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 TSKSQ9UJT2 592 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 NAGPAQ9UK23 515 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 PITPNM2Q9BZ72 1349 aa14.14□□□□□ -0.15
CCDC88A-214ENST00000621814 OPLAHO14841 1288 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 RAD51CO43502 376 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 RPL13P26373 211 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 CFAP58Q5T655 872 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 LRCH2Q5VUJ6 765 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 RINT1Q6NUQ1 792 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 PPP4R3CPQ6ZMV5 832 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms