RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, human

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS11-208	ENST00000621676	NSUN6	Q8TEA1	469 aa	Known RBP	11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	SCLT1	Q96NL6	688 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	PAXBP1	Q9Y5B6	917 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	DUSP10	Q9Y6W6	482 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	IKBKB	O14920	756 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	PSMD10	O75832	226 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	RPA1	P27694	616 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	CNGA1	P29973	690 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	YWHAB	P31946	246 aa	Known RBP	11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	UNC13D	Q70J99	1090 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	RBPJL	Q9UBG7	517 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	ASTN1	O14525	1302 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	FAM237A	A0A1B0GTK4	181 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	CBFA2T2	O43439	604 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	RHOBTB3	O94955	611 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	POLR2F	P61218	127 aa	Known RBP	11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	PDIA5	Q14554	519 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	E4F1	Q66K89	784 aa	Predicted RBP	11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	TTI2	Q6NXR4	508 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	ERO1B	Q86YB8	467 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	NT5C3A	Q9H0P0	336 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	DEF6	Q9H4E7	631 aa		11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	ADD3	Q9UEY8	706 aa	Known RBP	11.63	□□□□□ -0.55
VPS11-208	ENST00000621676	hCG_1984214	I3L0E3	225 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	EXOC3	O60645	756 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	GYPC	P04921	128 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	CYP3A4	P08684	503 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	CCNE1	P24864	410 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	TSR1	Q2NL82	804 aa	Known RBP	11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	ZBTB33	Q86T24	672 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	ZNF713	Q8N859	430 aa	Predicted RBP	11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	RWDD2A	Q9UIY3	292 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	LTBP1	Q14766	1721 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	MYH8	P13535	1937 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	PITPNM2	Q9BZ72	1349 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676		A0A0C4DFX4	3053 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	BTBD19	C9JJ37	291 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	AKR1B15	C9JRZ8	316 aa	Predicted RBP	11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	ZNF862	O60290	1169 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	ARIH2	O95376	493 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	ZNF18	P17022	549 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	SLC9A1	P19634	815 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	SPATA20	Q8TB22	786 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	NLRP4	Q96MN2	994 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	CBWD1	Q9BRT8	395 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	GOLPH3	Q9H4A6	298 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	GBA2	Q9HCG7	927 aa	Predicted RBP	11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	IVNS1ABP	Q9Y6Y0	642 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	NRDC	O43847	1150 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	ERCC5	P28715	1186 aa	Predicted RBP	11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	SLC12A3	P55017	1021 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	RAD9B	Q6WBX8	426 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	TC2N	Q8N9U0	490 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	LRRN4CL	Q8ND94	238 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	VPS33B	Q9H267	617 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	EHMT1	Q9H9B1	1298 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	AGO4	Q9HCK5	861 aa	Known RBP	11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	TRPC6	Q9Y210	931 aa		11.62	□□□□□ -0.55
VPS11-208	ENST00000621676	MYH7B	A7E2Y1	1941 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	TPM1	P09493	284 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	ZNF286B	P0CG31	522 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	FGFR4	P22455	802 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	CYP2C19	P33261	490 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	NR1I3	Q14994	352 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	NT5DC1	Q5TFE4	455 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	FAM20A	Q96MK3	541 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	TSG101	Q99816	390 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	HSD17B14	Q9BPX1	270 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	C7orf25	Q9BPX7	421 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	RIOK3	O14730	519 aa	Known RBP	11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	OFD1	O75665	1012 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	CAVIN2	O95810	425 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	QARS	P47897	775 aa	Known RBP	11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	ACTR2	P61160	394 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	SEMA3F	Q13275	785 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	DPH6	Q7L8W6	267 aa		11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	ZBTB45	Q96K62	511 aa	Predicted RBP	11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	LUC7L2	Q9Y383	392 aa	Known RBP	11.61	□□□□□ -0.55
VPS11-208	ENST00000621676	SOWAHB	A6NEL2	793 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	LRRC37A	A6NMS7	1700 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	C19orf81	C9J6K1	198 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	AKAP3	O75969	853 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	TPM2	P07951	284 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	ADCYAP1R1	P41586	468 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	GCLM	P48507	274 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	ACOT2	P49753	483 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	STXBP2	Q15833	593 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	C2CD6	Q53TS8	623 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	C2orf69	Q8N8R5	385 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	TRIML1	Q8N9V2	468 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	FAM49A	Q9H0Q0	323 aa	Predicted RBP	11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	JPH1	Q9HDC5	661 aa	Predicted RBP	11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	TOPORS	Q9NS56	1045 aa	Predicted RBP	11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	MYO9B	Q13459	2157 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	TXN	P10599	105 aa	Known RBP	11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	CCND2	P30279	289 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	DLG4	P78352	724 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	EPC2	Q52LR7	807 aa		11.6	□□□□□ -0.55
VPS11-208	ENST00000621676	ANO5	Q75V66	913 aa		11.6	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms