RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 NBPF20Q3BBV1 942 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 TTC38Q5R3I4 469 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 UTP14CQ5TAP6 766 aaKnown RBP5.91□□□□□ -1.46
SHMT1-211ENST00000618902 FOXD4L5Q5VV16 416 aaPredicted RBP5.91□□□□□ -1.46
SHMT1-211ENST00000618902 MCTP1Q6DN14 999 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 TAF2Q6P1X5 1199 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 LRSAM1Q6UWE0 723 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 PLPPR4Q7Z2D5 763 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 SMAP1Q8IYB5 467 aaPredicted RBP5.91□□□□□ -1.46
SHMT1-211ENST00000618902 C7orf31Q8N865 590 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 TMEM87AQ8NBN3 555 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 RETREG2Q8NC44 543 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 FOXD4L4Q8WXT5 416 aaPredicted RBP5.91□□□□□ -1.46
SHMT1-211ENST00000618902 SEPT1Q8WYJ6 367 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 RSPH1Q8WYR4 309 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 ZNF577Q9BSK1 485 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 GZF1Q9H116 711 aaPredicted RBP5.91□□□□□ -1.46
SHMT1-211ENST00000618902 HIPK3Q9H422 1215 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 BRMS1Q9HCU9 246 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 JPH1Q9HDC5 661 aaPredicted RBP5.91□□□□□ -1.46
SHMT1-211ENST00000618902 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.91□□□□□ -1.46
SHMT1-211ENST00000618902 ERAP1Q9NZ08 941 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 SLC9A2Q9UBY0 812 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 TCEAL9Q9UHQ7 104 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 NOL7Q9UMY1 257 aaKnown RBP5.91□□□□□ -1.46
SHMT1-211ENST00000618902 NOD1Q9Y239 953 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 SQORQ9Y6N5 450 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 MYO9BQ13459 2157 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 NRCAMQ92823 1304 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 WDR81Q562E7 1941 aa5.91□□□□□ -1.46
SHMT1-211ENST00000618902 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 TRIM43BA6NCK2 446 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 RRN3P2A6NIE6 340 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 ZBTB42B2RXF5 422 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 H3BRB1 525 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 CHMP2AO43633 222 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 RRP9O43818 475 aaKnown RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 ZNF862O60290 1169 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 ZNF500O60304 480 aaPredicted RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 CAVIN2O95810 425 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 GCFC2P16383 781 aaKnown RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 ITGB8P26012 769 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 MCM7P33993 719 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 TCF7P36402 384 aaPredicted RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 GRIN1Q05586 938 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 MFSD10Q14728 455 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 ZSCAN23Q3MJ62 389 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 ODR4Q5SWX8 454 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 RASIP1Q5U651 963 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 LRCH2Q5VUJ6 765 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 SH3RF1Q7Z6J0 888 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 RSPH3Q86UC2 560 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 CCDC60Q8IWA6 550 aaPredicted RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 EXOC8Q8IYI6 725 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 NME8Q8N427 588 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 USP38Q8NB14 1042 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 RDM1Q8NG50 284 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 HERVK_113Q902F9 699 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 WNT8BQ93098 351 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 TRIM43Q96BQ3 446 aaPredicted RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 VWCEQ96DN2 955 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 ZBTB10Q96DT7 871 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 PDLIM2Q96JY6 352 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 RIT2Q99578 217 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 SDF4Q9BRK5 362 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 NOC4LQ9BVI4 516 aaKnown RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 TRPV6Q9H1D0 765 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 RNPEPQ9H4A4 650 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 SMARCAD1Q9H4L7 1026 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 TUT1Q9H6E5 874 aaKnown RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 IL23AQ9NPF7 189 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 PRDM5Q9NQX1 630 aaPredicted RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 WRAP73Q9P2S5 460 aaPredicted RBP5.9□□□□□ -1.46
SHMT1-211ENST00000618902 CCDC39Q9UFE4 941 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 GTF2IRD1Q9UHL9 959 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 KIF3AQ9Y496 699 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 PPME1Q9Y570 386 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 CLIC4Q9Y696 253 aa5.9□□□□□ -1.46
SHMT1-211ENST00000618902 TET1Q8NFU7 2136 aa5.9□□□□□ -1.47
SHMT1-211ENST00000618902 KAT6AQ92794 2004 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 A0A087WWV3 80 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 CARNS1A5YM72 827 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 TMEM150BA6NC51 233 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 PP2D1A8MPX8 630 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 ZBTB39O15060 712 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 B4GALT4O60513 344 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 NEMFO60524 1076 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 DKC1O60832 514 aaKnown RBP eCLIP5.89□□□□□ -1.47
SHMT1-211ENST00000618902 GAS7O60861 476 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 PRPF40AO75400 957 aaKnown RBP5.89□□□□□ -1.47
SHMT1-211ENST00000618902 OFD1O75665 1012 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 FGBP02675 491 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 CXCL10P02778 98 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 ZSCAN22P10073 491 aaPredicted RBP5.89□□□□□ -1.47
SHMT1-211ENST00000618902 MARK3P27448 753 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 SFNP31947 248 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 TXKP42681 527 aa5.89□□□□□ -1.47
SHMT1-211ENST00000618902 TRAPPC10P48553 1259 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms