RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 MIIPQ5JXC2 388 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 GJB7Q6PEY0 223 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 ZKSCAN4Q969J2 545 aaPredicted RBP15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 PAGR1Q9BTK6 254 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 NAA15Q9BXJ9 866 aaKnown RBP15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 IDI2Q9BXS1 227 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 CD248Q9HCU0 757 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 PACSIN2Q9UNF0 486 aaPredicted RBP15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 LRRC10BA6NIK2 292 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 NFIBO00712 420 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 KIAA0754O94854 1291 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 FAM133AQ8N9E0 248 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 DCAF4Q8WV16 495 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 RASSF10A6NK89 507 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 GCOM1H8Y6P7 765 aaPredicted RBP15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 WNT10BO00744 389 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 POLR2MP0CAP2 368 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 KIF5AQ12840 1032 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 DNAJC19Q96DA6 116 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 IFIH1Q9BYX4 1025 aaKnown RBP15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 STK17AQ9UEE5 414 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 SAR1BQ9Y6B6 198 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 FAM13AO94988 1023 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 CHRM1P11229 460 aaPredicted RBP15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 PDIA5Q14554 519 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 COG2Q14746 738 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 PPP4R3AQ6IN85 833 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 GBP6Q6ZN66 633 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 LDHDQ86WU2 507 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 MICALL2Q8IY33 904 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 SH2D3CQ8N5H7 860 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 ERMNQ8TAM6 284 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 ZNF507Q8TCN5 953 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 HOOK2Q96ED9 719 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 RUFY1Q96T51 708 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 EIF2AK1Q9BQI3 630 aaKnown RBP15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 CUEDC2Q9H467 287 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 ADAMTS1Q9UHI8 967 aa15.86■□□□□ 0.13
SHROOM1-208ENST00000617339 TESPA1A2RU30 521 aaPredicted RBP15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 CYLC1P35663 651 aaPredicted RBP15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 HERVK_113P62684 666 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 SPP2Q13103 211 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 ARSHQ5FYA8 562 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 SYCP3Q8IZU3 236 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 OTUD6BQ8N6M0 293 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 ZNF577Q9BSK1 485 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 ZNRF3Q9ULT6 936 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 CEP83Q9Y592 693 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 CPP00450 1065 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 SLC9A1P19634 815 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 USP8P40818 1118 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 GIMAP7Q8NHV1 300 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 SCFD1Q8WVM8 642 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 SPAG5Q96R06 1193 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 CAPN11Q9UMQ6 739 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 RABGAP1Q9Y3P9 1069 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 ADAMTSL1Q8N6G6 1762 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 AGPSO00116 658 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 MAGEA1P43355 309 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 FKBP3Q00688 224 aaKnown RBP15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 CENPPQ6IPU0 288 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 TATDN1Q6P1N9 297 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 WDR93Q6P2C0 686 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 CEP89Q96ST8 783 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 GOPCQ9HD26 462 aa15.85■□□□□ 0.13
SHROOM1-208ENST00000617339 NHSQ6T4R5 1651 aa15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 TISP43B9A030 160 aa15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 OPLAHO14841 1288 aa15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 LLGL1Q15334 1064 aa15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 C7orf43Q8WVR3 580 aa15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 FAM84AQ96KN4 292 aa15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 NT5C3AQ9H0P0 336 aa15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 CNOT7Q9UIV1 285 aaKnown RBP15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 USP20Q9Y2K6 914 aa15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 AMPD2Q01433 879 aa15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 TUBB2AQ13885 445 aa15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 TUBB2BQ9BVA1 445 aa15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 COL4A3BPQ9Y5P4 624 aa15.84■□□□□ 0.13
SHROOM1-208ENST00000617339 DDX60LQ5H9U9 1706 aaKnown RBP15.83■□□□□ 0.13
SHROOM1-208ENST00000617339 SMARCA1P28370 1054 aa15.83■□□□□ 0.13
SHROOM1-208ENST00000617339 TNIP1Q15025 636 aa15.83■□□□□ 0.13
SHROOM1-208ENST00000617339 MAN2A1Q16706 1144 aa15.83■□□□□ 0.13
SHROOM1-208ENST00000617339 HAUS3Q68CZ6 603 aa15.83■□□□□ 0.13
SHROOM1-208ENST00000617339 HDAC7Q8WUI4 952 aa15.83■□□□□ 0.13
SHROOM1-208ENST00000617339 WDR18Q9BV38 432 aa15.83■□□□□ 0.13
SHROOM1-208ENST00000617339 WDR11Q9BZH6 1224 aa15.83■□□□□ 0.13
SHROOM1-208ENST00000617339 ARHGAP20Q9P2F6 1191 aa15.83■□□□□ 0.13
SHROOM1-208ENST00000617339 RREB1Q92766 1687 aa15.83■□□□□ 0.13
SHROOM1-208ENST00000617339 FRMD3A2A2Y4 597 aa15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 CETN3O15182 167 aa15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 KRT86O43790 486 aa15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 RDXP35241 583 aaKnown RBP15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 CLK2P49760 499 aaKnown RBP15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 GUF1Q8N442 669 aaKnown RBP15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 KIAA1551Q9HCM1 1747 aa15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 SCP2P22307 547 aa15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 AARSP49588 968 aaKnown RBP eCLIP15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 ZBED6P86452 979 aa15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 ACTN3Q08043 901 aaPredicted RBP15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 GRIPAP1Q4V328 841 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms