RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 PARP14Q460N5 1801 aa8.63□□□□□ -1.03
NEK3-207ENST00000617054 AKR1B15C9JRZ8 316 aaPredicted RBP8.63□□□□□ -1.03
NEK3-207ENST00000617054 EPHA7Q15375 998 aa8.63□□□□□ -1.03
NEK3-207ENST00000617054 LBX2Q6XYB7 198 aa8.63□□□□□ -1.03
NEK3-207ENST00000617054 C1orf186Q6ZWK4 172 aa8.63□□□□□ -1.03
NEK3-207ENST00000617054 CCAR2Q8N163 923 aaKnown RBP8.63□□□□□ -1.03
NEK3-207ENST00000617054 MB21D1Q8N884 522 aa8.63□□□□□ -1.03
NEK3-207ENST00000617054 ANKRD20A12PQ8NF67 263 aa8.63□□□□□ -1.03
NEK3-207ENST00000617054 LRRC27Q9C0I9 530 aa8.63□□□□□ -1.03
NEK3-207ENST00000617054 CREBZFQ9NS37 354 aa8.63□□□□□ -1.03
NEK3-207ENST00000617054 TTC26A0AVF1 554 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 RASSF10A6NK89 507 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 USO1O60763 962 aaKnown RBP8.62□□□□□ -1.03
NEK3-207ENST00000617054 TNNT1P13805 278 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 HERVK_113P62684 666 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 PPATQ06203 517 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 SYCP1Q15431 976 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 TMEM63BQ5T3F8 832 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 NSUN6Q8TEA1 469 aaKnown RBP8.62□□□□□ -1.03
NEK3-207ENST00000617054 SMCR8Q8TEV9 937 aaPredicted RBP8.62□□□□□ -1.03
NEK3-207ENST00000617054 CRACR2AQ9BSW2 395 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 TCEAL9Q9UHQ7 104 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 OTOFQ9HC10 1997 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 A0A0G2JLL6 359 aaPredicted RBP8.62□□□□□ -1.03
NEK3-207ENST00000617054 TISP43B9A030 160 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 EPHB6O15197 1021 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 TBCAO75347 108 aaKnown RBP8.62□□□□□ -1.03
NEK3-207ENST00000617054 CCND2P30279 289 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 ADAM9Q13443 819 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 LRRC55Q6ZSA7 311 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 CYFIP1Q7L576 1253 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 PRRT2Q7Z6L0 340 aaPredicted RBP8.62□□□□□ -1.03
NEK3-207ENST00000617054 ZNF507Q8TCN5 953 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 SLC10A4Q96EP9 437 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 NACC1Q96RE7 527 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 RIT2Q99578 217 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 CHP1Q99653 195 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 MOV10L1Q9BXT6 1211 aaKnown RBP8.62□□□□□ -1.03
NEK3-207ENST00000617054 SPATC1LQ9H0A9 340 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 KCTD10Q9H3F6 313 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 TUFT1Q9NNX1 390 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 FAM207AQ9NSI2 230 aaPredicted RBP8.62□□□□□ -1.03
NEK3-207ENST00000617054 HTTP42858 3142 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 ARHGEF35A5YM69 484 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 FAM13AO94988 1023 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 ABL1P00519 1130 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 PSMD2Q13200 908 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 SWSAP1Q6NVH7 229 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.62□□□□□ -1.03
NEK3-207ENST00000617054 NLRX1Q86UT6 975 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 RDH13Q8NBN7 331 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 NOC3LQ8WTT2 800 aaKnown RBP8.62□□□□□ -1.03
NEK3-207ENST00000617054 PPP1R13BQ96KQ4 1090 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 RBPJLQ9UBG7 517 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 TFR2Q9UP52 801 aa8.62□□□□□ -1.03
NEK3-207ENST00000617054 FRMD3A2A2Y4 597 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 SPDYE5A6NIY4 337 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 LGALS16A8MUM7 142 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 HIP1RO75146 1068 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 P4HBP07237 508 aaKnown RBP8.61□□□□□ -1.03
NEK3-207ENST00000617054 EEF1GP26641 437 aaKnown RBP8.61□□□□□ -1.03
NEK3-207ENST00000617054 YWHABP31946 246 aaKnown RBP8.61□□□□□ -1.03
NEK3-207ENST00000617054 KRT9P35527 623 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 CASP4P49662 377 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 SPAG1Q07617 926 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 MOGSQ13724 837 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 ODR4Q5SWX8 454 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 PADI6Q6TGC4 694 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 RAD9BQ6WBX8 426 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 IRX2Q9BZI1 471 aaPredicted RBP8.61□□□□□ -1.03
NEK3-207ENST00000617054 GABBR1Q9UBS5 961 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 KIAA1217Q5T5P2 1943 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 FAM170AA1A519 330 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 BACH1O14867 736 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 MFAP3LO75121 409 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 CNMDO75829 334 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 BCRP11274 1271 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 TRIM21P19474 475 aaKnown RBP8.61□□□□□ -1.03
NEK3-207ENST00000617054 NR2F2P24468 414 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 QARSP47897 775 aaKnown RBP8.61□□□□□ -1.03
NEK3-207ENST00000617054 GHRHRQ02643 423 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 CCDC40Q4G0X9 1142 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 ZCWPW2Q504Y3 356 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 DAW1Q8N136 415 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 PROCA1Q8NCQ7 364 aaPredicted RBP8.61□□□□□ -1.03
NEK3-207ENST00000617054 KIFC3Q9BVG8 833 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 MMRN2Q9H8L6 949 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 USP20Q9Y2K6 914 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 PTPRFP10586 1907 aa8.61□□□□□ -1.03
NEK3-207ENST00000617054 PAPPA2Q9BXP8 1791 aa8.6□□□□□ -1.03
NEK3-207ENST00000617054 SOWAHBA6NEL2 793 aa8.6□□□□□ -1.03
NEK3-207ENST00000617054 FDX1P10109 184 aa8.6□□□□□ -1.03
NEK3-207ENST00000617054 KCNA2P16389 499 aa8.6□□□□□ -1.03
NEK3-207ENST00000617054 OAZ1P54368 228 aa8.6□□□□□ -1.03
NEK3-207ENST00000617054 FKBP3Q00688 224 aaKnown RBP8.6□□□□□ -1.03
NEK3-207ENST00000617054 ARMC9Q7Z3E5 817 aa8.6□□□□□ -1.03
NEK3-207ENST00000617054 TSG101Q99816 390 aa8.6□□□□□ -1.03
NEK3-207ENST00000617054 PORCNQ9H237 461 aa8.6□□□□□ -1.03
NEK3-207ENST00000617054 NDST4Q9H3R1 872 aa8.6□□□□□ -1.03
NEK3-207ENST00000617054 ZSWIM4Q9H7M6 989 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms