RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 FAM81BQ96LP2 452 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 USP17L10C9JJH3 530 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 MSH2P43246 934 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 COASYQ13057 564 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 E2F4Q16254 413 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 USP49Q70CQ1 688 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 K7ERI5 159 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 MCF2LO15068 1137 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 NCK2O43639 380 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 TDP2O95551 362 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 PEX19P40855 299 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 GCLMP48507 274 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 SEPT6Q14141 434 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 ZCCHC11Q5TAX3 1644 aaKnown RBP15.11■□□□□ 0.01
CPSF1-212ENST00000616140 C7orf31Q8N865 590 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 OSBPL9Q96SU4 736 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 RNF17Q9BXT8 1623 aaKnown RBP15.11■□□□□ 0.01
CPSF1-212ENST00000616140 SART1O43290 800 aaKnown RBP15.11■□□□□ 0.01
CPSF1-212ENST00000616140 FCER1AP12319 257 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 CCZ1BP86790 482 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 CCZ1P86791 482 aaPredicted RBP15.11■□□□□ 0.01
CPSF1-212ENST00000616140 TFDP1Q14186 410 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 EAPPQ56P03 285 aaPredicted RBP15.11■□□□□ 0.01
CPSF1-212ENST00000616140 SH2D4BQ5SQS7 431 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 STAG2Q8N3U4 1231 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 GDAP1Q8TB36 358 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 RAD54LQ92698 747 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 FAM84BQ96KN1 310 aaPredicted RBP15.11■□□□□ 0.01
CPSF1-212ENST00000616140 DDX47Q9H0S4 455 aaKnown RBP15.11■□□□□ 0.01
CPSF1-212ENST00000616140 NARFQ9UHQ1 456 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 UTYO14607 1347 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 POTEFA5A3E0 1075 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 TADA3O75528 432 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 ABL1P00519 1130 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 POTEIP0CG38 1075 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 POTEGQ6S5H5 508 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 POTEEQ6S8J3 1075 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.11■□□□□ 0.01
CPSF1-212ENST00000616140 ANKRD36BP1Q96IX9 119 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 QTRT2Q9H974 415 aaKnown RBP15.11■□□□□ 0.01
CPSF1-212ENST00000616140 TRPC5Q9UL62 973 aaPredicted RBP15.11■□□□□ 0.01
CPSF1-212ENST00000616140 MRFAP1Q9Y605 127 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 LAMC1P11047 1609 aa15.11■□□□□ 0.01
CPSF1-212ENST00000616140 FRMD3A2A2Y4 597 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 ZNF233A6NK53 670 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 FMR1Q06787 632 aaKnown RBP eCLIP15.1■□□□□ 0.011e-6■■■□□ 16.7
CPSF1-212ENST00000616140 GRM4Q14833 912 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 SRBD1Q8N5C6 995 aaKnown RBP15.1■□□□□ 0.01
CPSF1-212ENST00000616140 ZNF277Q9NRM2 450 aaPredicted RBP15.1■□□□□ 0.01
CPSF1-212ENST00000616140 EVI5O60447 810 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 GSTA1P08263 222 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 GSTA2P09210 222 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 CCNYQ8ND76 341 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 CHP1Q99653 195 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 JPH2Q9BR39 696 aaPredicted RBP15.1■□□□□ 0.01
CPSF1-212ENST00000616140 USP31Q70CQ4 1352 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 WDR91A4D1P6 747 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 OPHN1O60890 802 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 MT-ND3P03897 115 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 IRX4P78413 519 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 FAM160B2Q86V87 743 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 SMYD2Q9NRG4 433 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 ANAPC7Q9UJX3 599 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 AKT3Q9Y243 479 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 NUB1Q9Y5A7 615 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 ALKQ9UM73 1620 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 PNPLA7Q6ZV29 1317 aa15.1■□□□□ 0.01
CPSF1-212ENST00000616140 EIF3CLB5ME19 914 aaKnown RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 TLR3O15455 904 aaKnown RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 ZBTB33Q86T24 672 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 EIF3CQ99613 913 aaKnown RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 ZNF335Q9H4Z2 1342 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 MMP10P09238 476 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 ACTN1P12814 892 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 ITKQ08881 620 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 C6orf118Q5T5N4 469 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 TBC1D9BQ66K14 1250 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 PDIK1LQ8N165 341 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 PDCD7Q8N8D1 485 aaKnown RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 XXYLT1Q8NBI6 393 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 IGDCC4Q8TDY8 1250 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 ADD3Q9UEY8 706 aaKnown RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 PACSIN2Q9UNF0 486 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 MIF4GDA9UHW6 222 aaKnown RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 GPC4O75487 556 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 SERPINB6P35237 376 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 USP14P54578 494 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 ASPHQ12797 758 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 ZNF394Q53GI3 561 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 MIS18BP1Q6P0N0 1132 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 ELAC2Q9BQ52 826 aaKnown RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 CNOT8Q9UFF9 292 aaKnown RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 NRKQ7Z2Y5 1582 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 A0A1W2PQC6 194 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 ATP1A1P05023 1023 aaKnown RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 VSNL1P62760 191 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 ALCAMQ13740 583 aa15.09■□□□□ 0.01
CPSF1-212ENST00000616140 KNOP1Q1ED39 458 aaKnown RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 TDRD3Q9H7E2 651 aaKnown RBP15.09■□□□□ 0.01
CPSF1-212ENST00000616140 PODXLO00592 558 aa15.08■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms