RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 NDUFAB1O14561 156 aa9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 ADCY8P40145 1251 aa9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 SCYL2Q6P3W7 929 aa9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 MS4A14Q96JA4 679 aa9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 ZMYND12Q9H0C1 365 aa9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 ADD3Q9UEY8 706 aaKnown RBP9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 FZD1Q9UP38 647 aa9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 TMOD1P28289 359 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 CYFIP1Q7L576 1253 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 OTUD6BQ8N6M0 293 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 RPGRIP1Q96KN7 1286 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 NT5C1BQ96P26 610 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 IQCGQ9H095 443 aaKnown RBP9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 KDM3BQ7LBC6 1761 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 ARFGEF2Q9Y6D5 1785 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 PNMA6AP0CW24 399 aaPredicted RBP9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 KRT71Q3SY84 523 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 ZNF746Q6NUN9 644 aaPredicted RBP9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 PDXDC2PQ6P474 469 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 ZBTB8OSQ8IWT0 167 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 NKX2-3Q8TAU0 364 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 ATP6V0A1Q93050 837 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 IWS1Q96ST2 819 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 C7orf25Q9BPX7 421 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 TMEM206Q9H813 350 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 RAB20Q9NX57 234 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 SYNJ2BP-COX16A0A087WUM0 186 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 ATP2A1O14983 1001 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 TNNC2P02585 160 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 DPEP1P16444 411 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 SPP2Q13103 211 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 GRB10Q13322 594 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 ZRSR2Q15696 482 aaKnown RBP9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 Q3C1V9 767 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 INTS2Q9H0H0 1204 aaKnown RBP9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 VPS37BQ9H9H4 285 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 COX16Q9P0S2 106 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 VEGFAP15692 232 aaPredicted RBP9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 IRX5P78411 483 aaPredicted RBP9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 GPR162Q16538 588 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 LMBRD2Q68DH5 695 aaPredicted RBP9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 SWSAP1Q6NVH7 229 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 MICALL2Q8IY33 904 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 LRRC45Q96CN5 670 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 NRBP2Q9NSY0 501 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 CAPN11Q9UMQ6 739 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 PVALEFA0A1B0GWK0 134 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 POLRMTO00411 1230 aaKnown RBP9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 PMS1P54277 932 aaKnown RBP9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 ZFPM1Q8IX07 1006 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 ANKS4BQ8N8V4 417 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 AGBL1Q96MI9 1066 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 PRR12Q9ULL5 1215 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 NFU1Q9UMS0 254 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 CASZ1Q86V15 1759 aa9.7□□□□□ -0.86
PDLIM5-222ENST00000615540 DDTLA6NHG4 134 aaPredicted RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 GOLGA8KD6RF30 607 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 RHOBTB3O94955 611 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 ASNSP08243 561 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 KCNB1Q14721 858 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 PDXDC1Q6P996 788 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 RSBN1LQ6PCB5 846 aaPredicted RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 GJB7Q6PEY0 223 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 HHIPL2Q6UWX4 724 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 SLC30A10Q6XR72 485 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 RAB17Q9H0T7 212 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 DDX4Q9NQI0 724 aaKnown RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 JRKLQ9Y4A0 524 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 ZNF142P52746 1687 aaPredicted RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 TMEM191BP0C7N4 346 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 SAMD15Q9P1V8 674 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 GABBR1Q9UBS5 961 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 BZW2Q9Y6E2 419 aaKnown RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 PALM3A6NDB9 673 aaPredicted RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 IPO5O00410 1097 aaKnown RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 PLEKP08567 350 aaPredicted RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 NSFP46459 744 aaKnown RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 DYNLT1P63172 113 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 RNF34Q969K3 372 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 FAM213AQ9BRX8 229 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 DNAJC17Q9NVM6 304 aaKnown RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 ESYT3A0FGR9 886 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 MAPK4P31152 587 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 HMGCS2P54868 508 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 CASP8Q14790 479 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 TMED8Q6PL24 325 aaPredicted RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 HAUS1Q96CS2 278 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 LRRC37A3O60309 1634 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 MYO3BQ8WXR4 1341 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 YARSP54577 528 aaKnown RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 TFAMQ00059 246 aaKnown RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 ZNF211Q13398 564 aaPredicted RBP9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 RASA3Q14644 834 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 RNF146Q9NTX7 359 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 SERPINA10Q9UK55 444 aa9.69□□□□□ -0.86
PDLIM5-222ENST00000615540 USP11P51784 963 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 DMTNQ08495 405 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 KCTD2Q14681 263 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 CC2D1AQ6P1N0 951 aaPredicted RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms