RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 LTBP3Q9NS15 1303 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 C9IYK1 514 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 H0Y8X5 98 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 TBC1D8O95759 1140 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 ITGB3P05106 788 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 ASGR2P07307 311 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 CNR2P34972 360 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 TAGLNQ01995 201 aaKnown RBP6.11□□□□□ -1.43
LINC00540-201ENST00000611481 KIF23Q02241 960 aaPredicted RBP6.11□□□□□ -1.43
LINC00540-201ENST00000611481 DLX2Q07687 328 aaPredicted RBP6.11□□□□□ -1.43
LINC00540-201ENST00000611481 FBXO46Q6PJ61 603 aaPredicted RBP6.11□□□□□ -1.43
LINC00540-201ENST00000611481 USP48Q86UV5 1035 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 CARFQ8N187 725 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 ALG3Q92685 438 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 LNPKQ9C0E8 428 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 SMPD4Q9NXE4 827 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 GGT7Q9UJ14 662 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 ASAP1Q9ULH1 1129 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 DUSP10Q9Y6W6 482 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 ITGB4P16144 1822 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 SCN11AQ9UI33 1791 aa6.11□□□□□ -1.43
LINC00540-201ENST00000611481 KIAA0100Q14667 2235 aaKnown RBP6.1□□□□□ -1.43
LINC00540-201ENST00000611481 TTC21AQ8NDW8 1320 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 PCDH11XQ9BZA7 1347 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 PCDH11YQ9BZA8 1340 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 UNC80Q8N2C7 3258 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 RPS6KA4O75676 772 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 EN2P19622 333 aaPredicted RBP6.1□□□□□ -1.43
LINC00540-201ENST00000611481 TACR1P25103 407 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 TM4SF1P30408 202 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 MC3RP41968 323 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 PMS1P54277 932 aaKnown RBP6.1□□□□□ -1.43
LINC00540-201ENST00000611481 ADAM17P78536 824 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 ANKRD39Q53RE8 183 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 SLITRK4Q8IW52 837 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 NKD1Q969G9 470 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 PTCHD1Q96NR3 888 aa6.1□□□□□ -1.43
LINC00540-201ENST00000611481 FAM208AQ9UK61 1670 aaKnown RBP6.1□□□□□ -1.43
LINC00540-201ENST00000611481 SMG6Q86US8 1419 aaKnown RBP6.09□□□□□ -1.43
LINC00540-201ENST00000611481 INSRP06213 1382 aa6.09□□□□□ -1.43
LINC00540-201ENST00000611481 USP42Q9H9J4 1324 aaKnown RBP6.09□□□□□ -1.43
LINC00540-201ENST00000611481 FAM86C2PA6NEL3 165 aa6.09□□□□□ -1.43
LINC00540-201ENST00000611481 AKAP8O43823 692 aaKnown RBP6.09□□□□□ -1.43
LINC00540-201ENST00000611481 HSP90B1P14625 803 aaKnown RBP6.09□□□□□ -1.43
LINC00540-201ENST00000611481 TNFRSF1AP19438 455 aa6.09□□□□□ -1.43
LINC00540-201ENST00000611481 L1CAMP32004 1257 aa6.09□□□□□ -1.43
LINC00540-201ENST00000611481 HUNKP57058 714 aa6.09□□□□□ -1.43
LINC00540-201ENST00000611481 ZNF445P59923 1031 aa6.09□□□□□ -1.43
LINC00540-201ENST00000611481 ZXDAP98168 799 aa6.09□□□□□ -1.43
LINC00540-201ENST00000611481 HS2ST1Q7LGA3 356 aa6.09□□□□□ -1.43
LINC00540-201ENST00000611481 RAPGEF4Q8WZA2 1011 aa6.09□□□□□ -1.43
LINC00540-201ENST00000611481 FCRL3Q96P31 734 aaPredicted RBP6.09□□□□□ -1.43
LINC00540-201ENST00000611481 NT5C1AQ9BXI3 368 aa6.09□□□□□ -1.43
LINC00540-201ENST00000611481 GP6Q9HCN6 339 aa6.09□□□□□ -1.43
LINC00540-201ENST00000611481 SF3B6Q9Y3B4 125 aaKnown RBP6.09□□□□□ -1.43
LINC00540-201ENST00000611481 FHOD1Q9Y613 1164 aa6.09□□□□□ -1.43
LINC00540-201ENST00000611481 AKAP11Q9UKA4 1901 aa6.09□□□□□ -1.44
LINC00540-201ENST00000611481 PAPPA2Q9BXP8 1791 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 CARMIL3Q8ND23 1372 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 CYP27B1O15528 508 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 ACRP10323 421 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 SARSP49591 514 aaKnown RBP6.08□□□□□ -1.44
LINC00540-201ENST00000611481 DCAF15Q66K64 600 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 CABP7Q86V35 215 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.08□□□□□ -1.44
LINC00540-201ENST00000611481 FIBCD1Q8N539 461 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 IP6K1Q92551 441 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 BRF1Q92994 677 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 TSPAN17Q96FV3 270 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 GLIS2Q9BZE0 524 aaPredicted RBP6.08□□□□□ -1.44
LINC00540-201ENST00000611481 ZNF277Q9NRM2 450 aaPredicted RBP6.08□□□□□ -1.44
LINC00540-201ENST00000611481 TMOD3Q9NYL9 352 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 NTMQ9P121 344 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 STXBP5LQ9Y2K9 1186 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 RGPD2P0DJD1 1756 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 CD163L1Q9NR16 1453 aa6.08□□□□□ -1.44
LINC00540-201ENST00000611481 RANBP2P49792 3224 aaKnown RBP6.08□□□□□ -1.44
LINC00540-201ENST00000611481 CGNL1Q0VF96 1302 aa6.07□□□□□ -1.44
LINC00540-201ENST00000611481 VCANP13611 3396 aa6.07□□□□□ -1.44
LINC00540-201ENST00000611481 SERPINB2P05120 415 aa6.07□□□□□ -1.44
LINC00540-201ENST00000611481 GLI4P10075 376 aa6.07□□□□□ -1.44
LINC00540-201ENST00000611481 PMLP29590 882 aa6.07□□□□□ -1.44
LINC00540-201ENST00000611481 EPS15P42566 896 aa6.07□□□□□ -1.44
LINC00540-201ENST00000611481 POU4F1Q01851 419 aa6.07□□□□□ -1.44
LINC00540-201ENST00000611481 TDRD10Q5VZ19 366 aaKnown RBP6.07□□□□□ -1.44
LINC00540-201ENST00000611481 RGMBQ6NW40 437 aa6.07□□□□□ -1.44
LINC00540-201ENST00000611481 NME9Q86XW9 330 aa6.07□□□□□ -1.44
LINC00540-201ENST00000611481 GPC2Q8N158 579 aa6.07□□□□□ -1.44
LINC00540-201ENST00000611481 CPA5Q8WXQ8 436 aa6.07□□□□□ -1.44
LINC00540-201ENST00000611481 RBM15Q96T37 977 aaKnown RBP eCLIP6.07□□□□□ -1.44
LINC00540-201ENST00000611481 AFDNP55196 1824 aaKnown RBP6.06□□□□□ -1.44
LINC00540-201ENST00000611481 BRCA2P51587 3418 aa6.06□□□□□ -1.44
LINC00540-201ENST00000611481 MATN3O15232 486 aa6.06□□□□□ -1.44
LINC00540-201ENST00000611481 CD3EP07766 207 aa6.06□□□□□ -1.44
LINC00540-201ENST00000611481 IMPDH2P12268 514 aa6.06□□□□□ -1.44
LINC00540-201ENST00000611481 IFNGR1P15260 489 aa6.06□□□□□ -1.44
LINC00540-201ENST00000611481 CD247P20963 164 aa6.06□□□□□ -1.44
LINC00540-201ENST00000611481 SLC9A5Q14940 896 aa6.06□□□□□ -1.44
LINC00540-201ENST00000611481 AXDND1Q5T1B0 1012 aaPredicted RBP6.06□□□□□ -1.44
LINC00540-201ENST00000611481 CPZQ66K79 652 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms