RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 HAS1Q92839 578 aa11.29□□□□□ -0.6
UPF1-213ENST00000601981 MTMR9Q96QG7 549 aa11.29□□□□□ -0.6
UPF1-213ENST00000601981 UNC45AQ9H3U1 944 aa11.29□□□□□ -0.6
UPF1-213ENST00000601981 TUT1Q9H6E5 874 aaKnown RBP11.29□□□□□ -0.6
UPF1-213ENST00000601981 BCAS3Q9H6U6 928 aa11.29□□□□□ -0.6
UPF1-213ENST00000601981 ZNF302Q9NR11 478 aa11.29□□□□□ -0.6
UPF1-213ENST00000601981 FAM13BQ9NYF5 915 aa11.29□□□□□ -0.6
UPF1-213ENST00000601981 BRCA2P51587 3418 aa11.29□□□□□ -0.6
UPF1-213ENST00000601981 WNT7AO00755 349 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 LGR5O75473 907 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 ZNF202O95125 648 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 ATG7O95352 703 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 CCNE2O96020 404 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 GNAT1P11488 350 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 SYKP43405 635 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 MNX1P50219 401 aaPredicted RBP11.28□□□□□ -0.6
UPF1-213ENST00000601981 TYRO3Q06418 890 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 MFSD10Q14728 455 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 KIAA0753Q2KHM9 967 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 FAM47CQ5HY64 1035 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 C1orf53Q5VUE5 145 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 HAUS3Q68CZ6 603 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 PDXDC2PQ6P474 469 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 NFRKBQ6P4R8 1299 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 ABHD15Q6UXT9 468 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 SLC39A5Q6ZMH5 540 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 CKAP2LQ8IYA6 745 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 ELOA2Q8IYF1 753 aaPredicted RBP11.28□□□□□ -0.6
UPF1-213ENST00000601981 AFAP1L1Q8TED9 768 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 FAM167AQ96KS9 214 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 CLIC6Q96NY7 704 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 TMEM60Q9H2L4 133 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 VAV3Q9UKW4 847 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 ALPK3Q96L96 1907 aa11.28□□□□□ -0.6
UPF1-213ENST00000601981 DCDC2CA8MYV0 355 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 ARVCFO00192 962 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 CAVIN2O95810 425 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 TECP42680 631 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 FXR2P51116 673 aaKnown RBP eCLIP11.27□□□□□ -0.618e-7■■■□□ 18.2
UPF1-213ENST00000601981 ATN1P54259 1190 aaPredicted RBP11.27□□□□□ -0.61
UPF1-213ENST00000601981 PDIA5Q14554 519 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 EPHA7Q15375 998 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 UVSSAQ2YD98 709 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 NBPF20Q3BBV1 942 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 SWSAP1Q6NVH7 229 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 SASS6Q6UVJ0 657 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 UBE2Q1Q7Z7E8 422 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 GJA10Q969M2 543 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 C16orf70Q9BSU1 422 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 GABBR1Q9UBS5 961 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 KCNH3Q9ULD8 1083 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 TRPC6Q9Y210 931 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 NOD1Q9Y239 953 aa11.27□□□□□ -0.61
UPF1-213ENST00000601981 EVPLQ92817 2033 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 IGKV6D-21A0A0A0MT36 114 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 HAS3O00219 553 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 P4HBP07237 508 aaKnown RBP11.26□□□□□ -0.61
UPF1-213ENST00000601981 MARK3P27448 753 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 QARSP47897 775 aaKnown RBP11.26□□□□□ -0.61
UPF1-213ENST00000601981 RTP1P59025 263 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 PSMC5P62195 406 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 PSMC6P62333 389 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 GRIN1Q05586 938 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 SNX17Q15036 470 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 B3GNT9Q6UX72 402 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 SESTD1Q86VW0 696 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 TRIM50Q86XT4 487 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 CCDC60Q8IWA6 550 aaPredicted RBP11.26□□□□□ -0.61
UPF1-213ENST00000601981 C4orf32Q8N8J7 132 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 BBXQ8WY36 941 aaPredicted RBP11.26□□□□□ -0.61
UPF1-213ENST00000601981 KAT2BQ92831 832 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 AK8Q96MA6 479 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 CCDC43Q96MW1 224 aaKnown RBP11.26□□□□□ -0.61
UPF1-213ENST00000601981 TOX2Q96NM4 488 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 CSRNP2Q9H175 543 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 NRBP2Q9NSY0 501 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 LRWD1Q9UFC0 647 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 PRKAG2Q9UGJ0 569 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 ATP11BQ9Y2G3 1177 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 MAFBQ9Y5Q3 323 aaPredicted RBP11.26□□□□□ -0.61
UPF1-213ENST00000601981 NRCAMQ92823 1304 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 IGSF9BQ9UPX0 1349 aa11.26□□□□□ -0.61
UPF1-213ENST00000601981 ARID2Q68CP9 1835 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 POTEB3A0JP26 581 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 C17orf102A2RUQ5 167 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 VWA3AA6NCI4 1184 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 POTEMA6NI47 508 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 RRN3P2A6NIE6 340 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 HBP1O60381 514 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 EVI5O60447 810 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 PQBP1O60828 265 aaKnown RBP11.25□□□□□ -0.61
UPF1-213ENST00000601981 SMIM10L2AP0DMW4 78 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 SMIM10L2BP0DMW5 78 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 LONP1P36776 959 aaKnown RBP11.25□□□□□ -0.61
UPF1-213ENST00000601981 TXLNAP40222 546 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 SPIRE1Q08AE8 756 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 PPFIA1Q13136 1202 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 STX1AQ16623 288 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 KRT79Q5XKE5 535 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 POTEBQ6S5H4 581 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms