RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 hCG_1984214I3L0E3 225 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 BACH1O14867 736 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 GPR182O15218 404 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 MBTPS2O43462 519 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 HBP1O60381 514 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 RXRAP19793 462 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 ADCY7P51828 1080 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 ACTR2P61160 394 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 UBE3AQ05086 875 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 TMEM62Q0P6H9 643 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 ADAM15Q13444 863 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 CLUL1Q15846 466 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 CEP55Q53EZ4 464 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 PPP1R18Q6NYC8 613 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 TMTC3Q6ZXV5 915 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 MICU3Q86XE3 530 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 ZNF713Q8N859 430 aaPredicted RBP10.92□□□□□ -0.66
VRK3-224ENST00000601849 POF1BQ8WVV4 589 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 AGO3Q9H9G7 860 aaKnown RBP10.92□□□□□ -0.66
VRK3-224ENST00000601849 RIC8AQ9NPQ8 531 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 ANO2Q9NQ90 1003 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 C1orf112Q9NSG2 853 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 PUF60Q9UHX1 559 aaKnown RBP10.92□□□□□ -0.66
VRK3-224ENST00000601849 GINS2Q9Y248 185 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 TELO2Q9Y4R8 837 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 TAF6LQ9Y6J9 622 aa10.92□□□□□ -0.66
VRK3-224ENST00000601849 RALGAPA2Q2PPJ7 1873 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 IGSF9BQ9UPX0 1349 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 hCG_1642624A0A1W2PR95 340 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 SMCO2A6NFE2 343 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 SLC27A2O14975 620 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 ZBTB43O43298 467 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 RPS6KA5O75582 802 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 CSPG5O95196 566 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 IBSPP21815 317 aaPredicted RBP10.91□□□□□ -0.66
VRK3-224ENST00000601849 KLRC1P26715 233 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 IRS1P35568 1242 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 LTBRP36941 435 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 FGD1P98174 961 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 AP3B2Q13367 1082 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 PLCB4Q15147 1175 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 PAN2Q504Q3 1202 aaKnown RBP10.91□□□□□ -0.66
VRK3-224ENST00000601849 ZNF484Q5JVG2 852 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 CREB3L3Q68CJ9 461 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 PDE12Q6L8Q7 609 aaKnown RBP10.91□□□□□ -0.66
VRK3-224ENST00000601849 MIS18BP1Q6P0N0 1132 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 MTHFD1LQ6UB35 978 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 ALYREFQ86V81 257 aaKnown RBP10.91□□□□□ -0.66
VRK3-224ENST00000601849 SGMS1Q86VZ5 419 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 CKAP2LQ8IYA6 745 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 EFHBQ8N7U6 833 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 KLHL23Q8NBE8 558 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 SPPL3Q8TCT6 385 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 PRRX2Q99811 253 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 TLE6Q9H808 572 aa10.91□□□□□ -0.66
VRK3-224ENST00000601849 RC3H2Q9HBD1 1191 aaKnown RBP10.91□□□□□ -0.66
VRK3-224ENST00000601849 MRPL42Q9Y6G3 142 aaKnown RBP10.91□□□□□ -0.66
VRK3-224ENST00000601849 KDM3AQ9Y4C1 1321 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 CCDC196A0A1B0GTZ2 297 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 MEIS1O00470 390 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 PPFIA3O75145 1194 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 ATG7O95352 703 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 HMGB1P09429 215 aaKnown RBP10.9□□□□□ -0.66
VRK3-224ENST00000601849 SARSP49591 514 aaKnown RBP10.9□□□□□ -0.66
VRK3-224ENST00000601849 BMS1Q14692 1282 aaKnown RBP10.9□□□□□ -0.66
VRK3-224ENST00000601849 RTN1Q16799 776 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 HERC4Q5GLZ8 1057 aaPredicted RBP10.9□□□□□ -0.66
VRK3-224ENST00000601849 PDXDC2PQ6P474 469 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 SLC24A5Q71RS6 500 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 NIPA1Q7RTP0 329 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 RTN4RL1Q86UN2 441 aaPredicted RBP10.9□□□□□ -0.66
VRK3-224ENST00000601849 RNF135Q8IUD6 432 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 ZNF710Q8N1W2 664 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 CCDC12Q8WUD4 166 aaPredicted RBP10.9□□□□□ -0.66
VRK3-224ENST00000601849 EDAQ92838 391 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 NEK1Q96PY6 1258 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 ESYT1Q9BSJ8 1104 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 ATP6V0A4Q9HBG4 840 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 AGO4Q9HCK5 861 aaKnown RBP10.9□□□□□ -0.66
VRK3-224ENST00000601849 ZNF302Q9NR11 478 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 TBC1D22BQ9NU19 505 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 CEP131Q9UPN4 1083 aa10.9□□□□□ -0.66
VRK3-224ENST00000601849 V9GY48 417 aaPredicted RBP10.9□□□□□ -0.66
VRK3-224ENST00000601849 COL1A2P08123 1366 aa10.9□□□□□ -0.67
VRK3-224ENST00000601849 HOXA2O43364 376 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 EYA4O95677 639 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 ITGB1P05556 798 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 ARP10275 920 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 ZSCAN20P17040 1043 aaPredicted RBP10.89□□□□□ -0.67
VRK3-224ENST00000601849 TMOD1P28289 359 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 NRIP1P48552 1158 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 CRYBB1P53674 252 aaPredicted RBP10.89□□□□□ -0.67
VRK3-224ENST00000601849 AKAP17AQ02040 695 aaKnown RBP10.89□□□□□ -0.67
VRK3-224ENST00000601849 KRT17Q04695 432 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 DLX2Q07687 328 aaPredicted RBP10.89□□□□□ -0.67
VRK3-224ENST00000601849 COASYQ13057 564 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 KRT32Q14532 448 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 NECTIN1Q15223 517 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 WWC2Q6AWC2 1192 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 DHX32Q7L7V1 743 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms