RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 ATG7O95352 703 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 CCNE2O96020 404 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 CYP3A4P08684 503 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 CD52P31358 61 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 CTNNB1P35222 781 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 TMEM62Q0P6H9 643 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 PAK2Q13177 524 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 GPM6BQ13491 265 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 PDXDC2PQ6P474 469 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 MTHFD1LQ6UB35 978 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 CKAP2LQ8IYA6 745 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 NME8Q8N427 588 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 ATP8B4Q8TF62 1192 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 PHKBQ93100 1093 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 ZNF577Q9BSK1 485 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 SLC26A6Q9BXS9 759 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 FTHL17Q9BXU8 183 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 AGXT2Q9BYV1 514 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 ZNF302Q9NR11 478 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 TBC1D22BQ9NU19 505 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 SQORQ9Y6N5 450 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 XIRP2A4UGR9 3374 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 IGLV3-22A0A075B6J6 115 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 IGKV6D-21A0A0A0MT36 114 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 ENPP3O14638 875 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 EPB41L2O43491 1005 aaKnown RBP11.12□□□□□ -0.63
VRK3-216ENST00000599342 PPFIA3O75145 1194 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 NEFLP07196 543 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 CCT2P78371 535 aaKnown RBP11.12□□□□□ -0.63
VRK3-216ENST00000599342 KRT76Q01546 638 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 BTG3Q14201 252 aaPredicted RBP11.12□□□□□ -0.63
VRK3-216ENST00000599342 PKN1Q16512 942 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 PRR16Q569H4 304 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 SWSAP1Q6NVH7 229 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 ABHD15Q6UXT9 468 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 CCDC60Q8IWA6 550 aaPredicted RBP11.12□□□□□ -0.63
VRK3-216ENST00000599342 SMAP1Q8IYB5 467 aaPredicted RBP11.12□□□□□ -0.63
VRK3-216ENST00000599342 TRIM22Q8IYM9 498 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 BANK1Q8NDB2 785 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 CRYGNQ8WXF5 182 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 UIMC1Q96RL1 719 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 C11orf84Q9BUA3 381 aaPredicted RBP11.12□□□□□ -0.63
VRK3-216ENST00000599342 CELF4Q9BZC1 486 aaKnown RBP11.12□□□□□ -0.63
VRK3-216ENST00000599342 UBE2ZQ9H832 354 aaPredicted RBP11.12□□□□□ -0.63
VRK3-216ENST00000599342 AGO3Q9H9G7 860 aaKnown RBP11.12□□□□□ -0.63
VRK3-216ENST00000599342 GINS2Q9Y248 185 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 SAMM50Q9Y512 469 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 COL1A2P08123 1366 aa11.12□□□□□ -0.63
VRK3-216ENST00000599342 IGSF9BQ9UPX0 1349 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 CPLX1O14810 134 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 DHX15O43143 795 aaKnown RBP11.11□□□□□ -0.63
VRK3-216ENST00000599342 RB1P06400 928 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 PSAPP07602 524 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 STAG3L1P0CL83 205 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 IFNAR1P17181 557 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 KCNA5P22460 613 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 KLRC1P26715 233 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 PDIA3P30101 505 aaKnown RBP11.11□□□□□ -0.63
VRK3-216ENST00000599342 NLRP5P59047 1200 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 ZNF484Q5JVG2 852 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 ODR4Q5SWX8 454 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 ZNF746Q6NUN9 644 aaPredicted RBP11.11□□□□□ -0.63
VRK3-216ENST00000599342 RUFY3Q7L099 469 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 RASGRP4Q8TDF6 673 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 NSUN3Q9H649 340 aaKnown RBP11.11□□□□□ -0.63
VRK3-216ENST00000599342 VPS54Q9P1Q0 977 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 PADI3Q9ULW8 664 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 CEP131Q9UPN4 1083 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 CYP46A1Q9Y6A2 500 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 MUC3AQ02505 3323 aa11.11□□□□□ -0.63
VRK3-216ENST00000599342 KDM3AQ9Y4C1 1321 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 CUL9Q8IWT3 2517 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 C5orf67F2Z3F1 127 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 DGKIO75912 1065 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 BMPR1AP36894 532 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 SSRP1Q08945 709 aaKnown RBP11.1□□□□□ -0.63
VRK3-216ENST00000599342 NFX1Q12986 1120 aaKnown RBP11.1□□□□□ -0.63
VRK3-216ENST00000599342 NTRK3Q16288 839 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 LEXMQ3ZCV2 418 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 CPLX2Q6PUV4 134 aaKnown RBP11.1□□□□□ -0.63
VRK3-216ENST00000599342 EP400NLQ6ZTU2 488 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 TRMT1LQ7Z2T5 733 aaKnown RBP11.1□□□□□ -0.63
VRK3-216ENST00000599342 NPAS4Q8IUM7 802 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 LINC01599Q8WXQ3 324 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 BBXQ8WY36 941 aaPredicted RBP11.1□□□□□ -0.63
VRK3-216ENST00000599342 ZNF689Q96CS4 500 aaPredicted RBP11.1□□□□□ -0.63
VRK3-216ENST00000599342 C22orf23Q9BZE7 217 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 LMAN2LQ9H0V9 348 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 RC3H2Q9HBD1 1191 aaKnown RBP11.1□□□□□ -0.63
VRK3-216ENST00000599342 NCOA5Q9HCD5 579 aaKnown RBP11.1□□□□□ -0.63
VRK3-216ENST00000599342 ZSWIM6Q9HCJ5 1215 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 SH3GLB2Q9NR46 395 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 LRFN2Q9ULH4 789 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 PCDHA10Q9Y5I2 948 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 REV3LO60673 3130 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 RALGAPA2Q2PPJ7 1873 aa11.1□□□□□ -0.63
VRK3-216ENST00000599342 TCF20Q9UGU0 1960 aaKnown RBP11.1□□□□□ -0.63
VRK3-216ENST00000599342 NLRC5Q86WI3 1866 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.09□□□□□ -0.63
VRK3-216ENST00000599342 DENND3A2RUS2 1198 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms