RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	FAM86B2	P0C5J1	330 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	IBSP	P21815	317 aa	Predicted RBP	12	□□□□□ -0.49
LSM4-205	ENST00000597776	SSTR3	P32745	418 aa	Predicted RBP	12	□□□□□ -0.49
LSM4-205	ENST00000597776	ADD1	P35611	737 aa	Known RBP	12	□□□□□ -0.49
LSM4-205	ENST00000597776	ZNF76	P36508	570 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	PAK2	Q13177	524 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	AP3B2	Q13367	1082 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	COL19A1	Q14993	1142 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	TMEM266	Q2M3C6	531 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	TSGA10IP	Q3SY00	556 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	PAN2	Q504Q3	1202 aa	Known RBP	12	□□□□□ -0.49
LSM4-205	ENST00000597776	TMEM31	Q5JXX7	168 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	PLPPR4	Q7Z2D5	763 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	GJD3	Q8N144	294 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	CLP1	Q92989	425 aa	Known RBP	12	□□□□□ -0.49
LSM4-205	ENST00000597776	C11orf84	Q9BUA3	381 aa	Predicted RBP	12	□□□□□ -0.49
LSM4-205	ENST00000597776	CLDND1	Q9NY35	253 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	PADI3	Q9ULW8	664 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	MRPL42	Q9Y6G3	142 aa	Known RBP	12	□□□□□ -0.49
LSM4-205	ENST00000597776	IGSF9B	Q9UPX0	1349 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	C5orf42	Q9H799	3197 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	hCG_1984214	I3L0E3	225 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	BACH1	O14867	736 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	ATG7	O95352	703 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	RPLP2	P05387	115 aa	Known RBP	11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	RB1	P06400	928 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	GATM	P50440	423 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	FGD1	P98174	961 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	KRT76	Q01546	638 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	APOBR	Q0VD83	1088 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	HYAL1	Q12794	435 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	KRT32	Q14532	448 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	PFKFB3	Q16875	520 aa	Predicted RBP	11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	MTHFD1L	Q6UB35	978 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	ABHD15	Q6UXT9	468 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	PLA2G4D	Q86XP0	818 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	NPAS4	Q8IUM7	802 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	CCDC60	Q8IWA6	550 aa	Predicted RBP	11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	TEX2	Q8IWB9	1127 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	CRIPAK	Q8N1N5	446 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	ZNF713	Q8N859	430 aa	Predicted RBP	11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	CELF4	Q9BZC1	486 aa	Known RBP	11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	TMX1	Q9H3N1	280 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	ALG13	Q9NP73	1137 aa	Known RBP	11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	GINS2	Q9Y248	185 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	RWDD3	Q9Y3V2	267 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	TTC3	P53804	2025 aa		11.99	□□□□□ -0.49
LSM4-205	ENST00000597776	MYO7A	Q13402	2215 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	IGLV3-22	A0A075B6J6	115 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	IGKV6D-21	A0A0A0MT36	114 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	SMIM35	A0A1B0GVV1	85 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	PI4K2B	G5E9Z4	385 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	PPFIA3	O75145	1194 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	MMP1	P03956	469 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	SCG2	P13521	617 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	DNAJB1	P25685	340 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	KLRC1	P26715	233 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	GTF2F1	P35269	517 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	LTBR	P36941	435 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	PLA2G5	P39877	138 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	METAP2	P50579	478 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	DLX2	Q07687	328 aa	Predicted RBP	11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	CLUL1	Q15846	466 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	FAM160B1	Q5W0V3	765 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	PDXDC2P	Q6P474	469 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	NIPA1	Q7RTP0	329 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	CMTR2	Q8IYT2	770 aa	Known RBP	11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	ATP8B4	Q8TF62	1192 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	CRYGN	Q8WXF5	182 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	TNPO1	Q92973	898 aa	Known RBP	11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	JAKMIP1	Q96N16	626 aa	Known RBP	11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	PPP1R16B	Q96T49	567 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	FTHL17	Q9BXU8	183 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	LMAN2L	Q9H0V9	348 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	GLT8D2	Q9H1C3	349 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	CDHR5	Q9HBB8	845 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	SQOR	Q9Y6N5	450 aa		11.98	□□□□□ -0.49
LSM4-205	ENST00000597776	KDM3A	Q9Y4C1	1321 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	ZBTB42	B2RXF5	422 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	IPO5	O00410	1097 aa	Known RBP	11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	LINC01565	O15544	149 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	DHX15	O43143	795 aa	Known RBP	11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	HBP1	O60381	514 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	MGEA5	O60502	916 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	HMGB1	P09429	215 aa	Known RBP	11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	ATP4A	P20648	1035 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	SLC26A2	P50443	739 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	RCAN1	P53805	252 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	NFX1	Q12986	1120 aa	Known RBP	11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	CAMK1	Q14012	370 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	PKN1	Q16512	942 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	CTC1	Q2NKJ3	1217 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	PUS10	Q3MIT2	529 aa	Known RBP	11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	SWSAP1	Q6NVH7	229 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776		Q6ZUG5	572 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	TRMT1L	Q7Z2T5	733 aa	Known RBP	11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	KIAA0319L	Q8IZA0	1049 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	RASGRP4	Q8TDF6	673 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	TMEM40	Q8WWA1	233 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	BRF1	Q92994	677 aa		11.97	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms