RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 BMP1P13497 986 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 CD52P31358 61 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 KCNQ1P51787 676 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 MRPS6P82932 125 aaKnown RBP11.93□□□□□ -0.5
LIG1-213ENST00000596672 FGD1P98174 961 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 STK3Q13188 491 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 UGCGQ16739 394 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 SWSAP1Q6NVH7 229 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 KIAA0319LQ8IZA0 1049 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 REXO1Q8N1G1 1221 aaKnown RBP11.93□□□□□ -0.5
LIG1-213ENST00000596672 SEPT8Q92599 483 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 ASB2Q96Q27 587 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 ZBED2Q9BTP6 218 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 IFIH1Q9BYX4 1025 aaKnown RBP11.93□□□□□ -0.5
LIG1-213ENST00000596672 TPCN1Q9ULQ1 816 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 PCDHA2Q9Y5H9 948 aa11.93□□□□□ -0.5
LIG1-213ENST00000596672 TRIOO75962 3097 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 CCDC196A0A1B0GTZ2 297 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 POTEB3A0JP26 581 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 KIF28PB7ZC32 967 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 IPO5O00410 1097 aaKnown RBP11.92□□□□□ -0.5
LIG1-213ENST00000596672 MSH4O15457 936 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 EPB41L2O43491 1005 aaKnown RBP11.92□□□□□ -0.5
LIG1-213ENST00000596672 MGEA5O60502 916 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 STBD1O95210 358 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 GNAT1P11488 350 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 KLRC1P26715 233 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 PSMA5P28066 241 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 GATMP50440 423 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 ST3GAL1Q11201 340 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 SCRN1Q12765 414 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 PRR16Q569H4 304 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 EARS2Q5JPH6 523 aaKnown RBP11.92□□□□□ -0.5
LIG1-213ENST00000596672 TJAP1Q5JTD0 557 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 TAF2Q6P1X5 1199 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 POTEBQ6S5H4 581 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 MTHFD1LQ6UB35 978 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 TEX2Q8IWB9 1127 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 ZNF274Q96GC6 653 aaPredicted RBP11.92□□□□□ -0.5
LIG1-213ENST00000596672 TGS1Q96RS0 853 aaKnown RBP11.92□□□□□ -0.5
LIG1-213ENST00000596672 SDF4Q9BRK5 362 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 C6orf50Q9HD87 102 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 THEGQ9P2T0 379 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 KCNJ14Q9UNX9 436 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 MAFBQ9Y5Q3 323 aaPredicted RBP11.92□□□□□ -0.5
LIG1-213ENST00000596672 CYP46A1Q9Y6A2 500 aa11.92□□□□□ -0.5
LIG1-213ENST00000596672 EFCAB14O75071 495 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 TDP2O95551 362 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 C22orf31O95567 290 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 AMHP03971 560 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 FDPSP14324 419 aaKnown RBP11.91□□□□□ -0.5
LIG1-213ENST00000596672 ZNF76P36508 570 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 TMEM266Q2M3C6 531 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 B3GNT9Q6UX72 402 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 LINC01465Q8N7H1 131 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 OXER1Q8TDS5 423 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 ATP8B4Q8TF62 1192 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 ATXN2LQ8WWM7 1075 aaKnown RBP11.91□□□□□ -0.5
LIG1-213ENST00000596672 ZNF689Q96CS4 500 aaPredicted RBP11.91□□□□□ -0.5
LIG1-213ENST00000596672 MBOAT7Q96N66 472 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 CEP89Q96ST8 783 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 ZNF577Q9BSK1 485 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 PDRG1Q9NUG6 133 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 TRPC6Q9Y210 931 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 INSL6Q9Y581 213 aa11.91□□□□□ -0.5
LIG1-213ENST00000596672 FNDC1Q4ZHG4 1894 aaPredicted RBP11.91□□□□□ -0.5
LIG1-213ENST00000596672 SMIM35A0A1B0GVV1 85 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 TMEM150BA6NC51 233 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 FAM205CA6NFA0 338 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 RRN3P2A6NIE6 340 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 RALGAPA2Q2PPJ7 1873 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 EPC2Q52LR7 807 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 TRMT1LQ7Z2T5 733 aaKnown RBP11.9□□□□□ -0.5
LIG1-213ENST00000596672 TBCKQ8TEA7 893 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 SLC5A5Q92911 643 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 IL17RAQ96F46 866 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 PPP1R16BQ96T49 567 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 CELF4Q9BZC1 486 aaKnown RBP11.9□□□□□ -0.5
LIG1-213ENST00000596672 GLT8D2Q9H1C3 349 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 UNC45AQ9H3U1 944 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 AZI2Q9H6S1 392 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 ZNF302Q9NR11 478 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 PADI3Q9ULW8 664 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 PCDHA4Q9UN74 947 aa11.9□□□□□ -0.5
LIG1-213ENST00000596672 NOC2LQ9Y3T9 749 aaKnown RBP11.9□□□□□ -0.5
LIG1-213ENST00000596672 IGSF9BQ9UPX0 1349 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 BACH1O14867 736 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 PSMD10O75832 226 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 AK2P54819 239 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 MRPS5P82675 430 aaKnown RBP11.89□□□□□ -0.51
LIG1-213ENST00000596672 DRP2Q13474 957 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 CAMK1Q14012 370 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 ZNF746Q6NUN9 644 aaPredicted RBP11.89□□□□□ -0.51
LIG1-213ENST00000596672 PDXDC2PQ6P474 469 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 TSHZ1Q6ZSZ6 1077 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 NECAB1Q8N987 351 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 ADAMTS19Q8TE59 1207 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 KHSRPQ92945 711 aaKnown RBP eCLIP11.89□□□□□ -0.51
LIG1-213ENST00000596672 ERVK-5Q9HDB9 667 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 CD320Q9NPF0 282 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms