RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 KIF28PB7ZC32 967 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 DKC1O60832 514 aaKnown RBP eCLIP16.91■□□□□ 0.3
UPF1-202ENST00000594243 ACRP10323 421 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 FXR1P51114 621 aaKnown RBP eCLIP16.91■□□□□ 0.3
UPF1-202ENST00000594243 LRIT3Q3SXY7 679 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 TTC38Q5R3I4 469 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 TMEM240Q5SV17 173 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 MARCH8Q5T0T0 291 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 ZNF618Q5T7W0 954 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 C16orf59Q7L2K0 433 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 RPAINQ86UA6 219 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 RSPH3Q86UC2 560 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 HSCBQ8IWL3 235 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 MTMR9Q96QG7 549 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.91■□□□□ 0.31e-7■■■■■ 27.5
UPF1-202ENST00000594243 TTC12Q9H892 705 aaPredicted RBP16.91■□□□□ 0.3
UPF1-202ENST00000594243 VAV3Q9UKW4 847 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 IGSF9BQ9UPX0 1349 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 RSPH10B2B2RC85 870 aa16.9■□□□□ 0.3
UPF1-202ENST00000594243 WNT7AO00755 349 aa16.9■□□□□ 0.3
UPF1-202ENST00000594243 RSPH10BP0C881 870 aa16.9■□□□□ 0.3
UPF1-202ENST00000594243 TXKP42681 527 aa16.9■□□□□ 0.3
UPF1-202ENST00000594243 EPHA7Q15375 998 aa16.9■□□□□ 0.3
UPF1-202ENST00000594243 ZNF174Q15697 407 aa16.9■□□□□ 0.3
UPF1-202ENST00000594243 C9orf50Q5SZB4 431 aa16.9■□□□□ 0.3
UPF1-202ENST00000594243 ZNF365Q70YC5 407 aa16.9■□□□□ 0.3
UPF1-202ENST00000594243 TRMT1LQ7Z2T5 733 aaKnown RBP16.9■□□□□ 0.3
UPF1-202ENST00000594243 DEFB128Q7Z7B8 93 aa16.9■□□□□ 0.3
UPF1-202ENST00000594243 WNT8BQ93098 351 aa16.9■□□□□ 0.3
UPF1-202ENST00000594243 MTIF3Q9H2K0 278 aaKnown RBP16.9■□□□□ 0.3
UPF1-202ENST00000594243 PCDHA2Q9Y5H9 948 aa16.9■□□□□ 0.3
UPF1-202ENST00000594243 EML1O00423 815 aa16.89■□□□□ 0.29
UPF1-202ENST00000594243 OATP04181 439 aa16.89■□□□□ 0.29
UPF1-202ENST00000594243 P4HBP07237 508 aaKnown RBP16.89■□□□□ 0.29
UPF1-202ENST00000594243 ACTN1P12814 892 aa16.89■□□□□ 0.29
UPF1-202ENST00000594243 KLRC1P26715 233 aa16.89■□□□□ 0.29
UPF1-202ENST00000594243 PSMC5P62195 406 aa16.89■□□□□ 0.29
UPF1-202ENST00000594243 RILPL1Q5EBL4 403 aa16.89■□□□□ 0.29
UPF1-202ENST00000594243 NCAPH2Q6IBW4 605 aa16.89■□□□□ 0.29
UPF1-202ENST00000594243 MTHFD1LQ6UB35 978 aa16.89■□□□□ 0.29
UPF1-202ENST00000594243 NME8Q8N427 588 aa16.89■□□□□ 0.29
UPF1-202ENST00000594243 RNPC3Q96LT9 517 aaKnown RBP16.89■□□□□ 0.29
UPF1-202ENST00000594243 FTOQ9C0B1 505 aaKnown RBP eCLIP16.89■□□□□ 0.29
UPF1-202ENST00000594243 SMIM35A0A1B0GVV1 85 aa16.88■□□□□ 0.29
UPF1-202ENST00000594243 ZNF862O60290 1169 aa16.88■□□□□ 0.29
UPF1-202ENST00000594243 QARSP47897 775 aaKnown RBP16.88■□□□□ 0.29
UPF1-202ENST00000594243 PRKCEQ02156 737 aa16.88■□□□□ 0.29
UPF1-202ENST00000594243 SPIRE1Q08AE8 756 aa16.88■□□□□ 0.29
UPF1-202ENST00000594243 XKR3Q5GH77 459 aa16.88■□□□□ 0.29
UPF1-202ENST00000594243 RUFY4Q6ZNE9 571 aa16.88■□□□□ 0.29
UPF1-202ENST00000594243 BANK1Q8NDB2 785 aa16.88■□□□□ 0.29
UPF1-202ENST00000594243 TRAPPC12Q8WVT3 735 aa16.88■□□□□ 0.29
UPF1-202ENST00000594243 DNAJB3Q8WWF6 145 aa16.88■□□□□ 0.29
UPF1-202ENST00000594243 HERVK_113Q902F9 699 aa16.88■□□□□ 0.29
UPF1-202ENST00000594243 MAGEB2O15479 319 aa16.87■□□□□ 0.29
UPF1-202ENST00000594243 CXCL10P02778 98 aa16.87■□□□□ 0.29
UPF1-202ENST00000594243 HSP90AA1P07900 732 aaKnown RBP16.87■□□□□ 0.29
UPF1-202ENST00000594243 OR52Z1P0C646 297 aa16.87■□□□□ 0.29
UPF1-202ENST00000594243 TOB1P50616 345 aaPredicted RBP16.87■□□□□ 0.29
UPF1-202ENST00000594243 UGCGQ16739 394 aa16.87■□□□□ 0.29
UPF1-202ENST00000594243 FAM26DQ5JW98 314 aa16.87■□□□□ 0.29
UPF1-202ENST00000594243 IER5Q5VY09 327 aa16.87■□□□□ 0.29
UPF1-202ENST00000594243 TRAF7Q6Q0C0 670 aa16.87■□□□□ 0.29
UPF1-202ENST00000594243 OTOP2Q7RTS6 562 aa16.87■□□□□ 0.29
UPF1-202ENST00000594243 NIFKQ9BYG3 293 aaKnown RBP16.87■□□□□ 0.29
UPF1-202ENST00000594243 TMEM60Q9H2L4 133 aa16.87■□□□□ 0.29
UPF1-202ENST00000594243 DDX11L8A8MPP1 907 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 ZBTB42B2RXF5 422 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 M0QZ92 97 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 LAD1O00515 517 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 NBNO60934 754 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 TECP42680 631 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 GPNMBQ14956 572 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 TMEM266Q2M3C6 531 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 BRAPQ7Z569 592 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 C4orf19Q8IY42 314 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 NEK9Q8TD19 979 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 VWCEQ96DN2 955 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 FAM49AQ9H0Q0 323 aaPredicted RBP16.86■□□□□ 0.29
UPF1-202ENST00000594243 ZSWIM4Q9H7M6 989 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 FOXD4L1Q9NU39 408 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 PCDHB6Q9Y5E3 794 aa16.86■□□□□ 0.29
UPF1-202ENST00000594243 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.85■□□□□ 0.29
UPF1-202ENST00000594243 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.85■□□□□ 0.29
UPF1-202ENST00000594243 VPS37CA5D8V6 355 aaPredicted RBP16.85■□□□□ 0.29
UPF1-202ENST00000594243 SLITRK3O94933 977 aa16.85■□□□□ 0.29
UPF1-202ENST00000594243 CTSHP09668 335 aa16.85■□□□□ 0.29
UPF1-202ENST00000594243 PDIA4P13667 645 aaKnown RBP16.85■□□□□ 0.29
UPF1-202ENST00000594243 SYT1P21579 422 aa16.85■□□□□ 0.29
UPF1-202ENST00000594243 TMOD1P28289 359 aa16.85■□□□□ 0.29
UPF1-202ENST00000594243 NBR1Q14596 966 aa16.85■□□□□ 0.29
UPF1-202ENST00000594243 RASIP1Q5U651 963 aa16.85■□□□□ 0.29
UPF1-202ENST00000594243 CNKSR3Q6P9H4 555 aa16.85■□□□□ 0.29
UPF1-202ENST00000594243 OTUD6AQ7L8S5 288 aa16.85■□□□□ 0.29
UPF1-202ENST00000594243 C4orf32Q8N8J7 132 aa16.85■□□□□ 0.29
UPF1-202ENST00000594243 ZBTB10Q96DT7 871 aa16.85■□□□□ 0.29
UPF1-202ENST00000594243 DYDC2Q96IM9 177 aa16.85■□□□□ 0.29
UPF1-202ENST00000594243 EIF2AK1Q9BQI3 630 aaKnown RBP16.85■□□□□ 0.29
UPF1-202ENST00000594243 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.85■□□□□ 0.29
UPF1-202ENST00000594243 SEPT9Q9UHD8 586 aaPredicted RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms