RNA–Protein interactions for RNA: ENST00000593641.3

SSBP4-203, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-203ENST00000593641 COL19A1Q14993 1142 aa25.83■■□□□ 1.73
SSBP4-203ENST00000593641 PLVAPQ9BX97 442 aa25.83■■□□□ 1.73
SSBP4-203ENST00000593641 BARHL2Q9NY43 387 aa25.83■■□□□ 1.73
SSBP4-203ENST00000593641 POTEB3A0JP26 581 aa25.82■■□□□ 1.72
SSBP4-203ENST00000593641 GOLGA8AA7E2F4 631 aa25.82■■□□□ 1.72
SSBP4-203ENST00000593641 GOLGA8BA8MQT2 603 aa25.82■■□□□ 1.72
SSBP4-203ENST00000593641 STXBP3O00186 592 aa25.82■■□□□ 1.72
SSBP4-203ENST00000593641 GRM6O15303 877 aa25.82■■□□□ 1.72
SSBP4-203ENST00000593641 ITGB3BPQ13352 177 aaPredicted RBP25.82■■□□□ 1.72
SSBP4-203ENST00000593641 POTEBQ6S5H4 581 aa25.82■■□□□ 1.72
SSBP4-203ENST00000593641 NPAS4Q8IUM7 802 aa25.82■■□□□ 1.72
SSBP4-203ENST00000593641 TRAPPC12Q8WVT3 735 aa25.82■■□□□ 1.72
SSBP4-203ENST00000593641 LINC01599Q8WXQ3 324 aa25.82■■□□□ 1.72
SSBP4-203ENST00000593641 BRPF3Q9ULD4 1205 aa25.82■■□□□ 1.72
SSBP4-203ENST00000593641 IGSF9BQ9UPX0 1349 aa25.82■■□□□ 1.72
SSBP4-203ENST00000593641 SREBF1P36956 1147 aa25.81■■□□□ 1.72
SSBP4-203ENST00000593641 EXOSC10Q01780 885 aaKnown RBP25.81■■□□□ 1.72
SSBP4-203ENST00000593641 FUT2Q10981 343 aa25.81■■□□□ 1.72
SSBP4-203ENST00000593641 KRT32Q14532 448 aa25.81■■□□□ 1.72
SSBP4-203ENST00000593641 CMTR2Q8IYT2 770 aaKnown RBP25.81■■□□□ 1.72
SSBP4-203ENST00000593641 CELF4Q9BZC1 486 aaKnown RBP25.81■■□□□ 1.72
SSBP4-203ENST00000593641 C11orf16Q9NQ32 467 aa25.81■■□□□ 1.72
SSBP4-203ENST00000593641 PADI3Q9ULW8 664 aa25.81■■□□□ 1.72
SSBP4-203ENST00000593641 ARIH1Q9Y4X5 557 aaPredicted RBP25.81■■□□□ 1.72
SSBP4-203ENST00000593641 KLF18A0A0U1RQI7 1052 aa25.8■■□□□ 1.72
SSBP4-203ENST00000593641 SMIM35A0A1B0GVV1 85 aa25.8■■□□□ 1.72
SSBP4-203ENST00000593641 MEIS1O00470 390 aa25.8■■□□□ 1.72
SSBP4-203ENST00000593641 BACH1O14867 736 aa25.8■■□□□ 1.72
SSBP4-203ENST00000593641 MMP1P03956 469 aa25.8■■□□□ 1.72
SSBP4-203ENST00000593641 STAG3L1P0CL83 205 aa25.8■■□□□ 1.72
SSBP4-203ENST00000593641 ALADP13716 330 aa25.8■■□□□ 1.72
SSBP4-203ENST00000593641 KRT76Q01546 638 aa25.8■■□□□ 1.72
SSBP4-203ENST00000593641 FAM160B1Q5W0V3 765 aa25.8■■□□□ 1.72
SSBP4-203ENST00000593641 NME8Q8N427 588 aa25.8■■□□□ 1.72
SSBP4-203ENST00000593641 TMEM260Q9NX78 707 aa25.8■■□□□ 1.72
SSBP4-203ENST00000593641 NAP1L2Q9ULW6 460 aaPredicted RBP25.8■■□□□ 1.72
SSBP4-203ENST00000593641 DDX39AO00148 427 aaKnown RBP25.79■■□□□ 1.72
SSBP4-203ENST00000593641 CSPG5O95196 566 aa25.79■■□□□ 1.72
SSBP4-203ENST00000593641 ATG7O95352 703 aa25.79■■□□□ 1.72
SSBP4-203ENST00000593641 RCAN1P53805 252 aa25.79■■□□□ 1.72
SSBP4-203ENST00000593641 FGD1P98174 961 aa25.79■■□□□ 1.72
SSBP4-203ENST00000593641 TSGA10IPQ3SY00 556 aa25.79■■□□□ 1.72
SSBP4-203ENST00000593641 MTHFD1LQ6UB35 978 aa25.79■■□□□ 1.72
SSBP4-203ENST00000593641 NIPA1Q7RTP0 329 aa25.79■■□□□ 1.72
SSBP4-203ENST00000593641 P2RX5Q93086 422 aa25.79■■□□□ 1.72
SSBP4-203ENST00000593641 PRKAG3Q9UGI9 489 aa25.79■■□□□ 1.72
SSBP4-203ENST00000593641 MRPL42Q9Y6G3 142 aaKnown RBP25.79■■□□□ 1.72
SSBP4-203ENST00000593641 KDM3AQ9Y4C1 1321 aa25.79■■□□□ 1.72
SSBP4-203ENST00000593641 HBP1O60381 514 aa25.78■■□□□ 1.72
SSBP4-203ENST00000593641 HMGB1P09429 215 aaKnown RBP25.78■■□□□ 1.72
SSBP4-203ENST00000593641 SCG2P13521 617 aa25.78■■□□□ 1.72
SSBP4-203ENST00000593641 CLK2P49760 499 aaKnown RBP25.78■■□□□ 1.72
SSBP4-203ENST00000593641 ADCK5Q3MIX3 580 aa25.78■■□□□ 1.72
SSBP4-203ENST00000593641 RTN4RL1Q86UN2 441 aaPredicted RBP25.78■■□□□ 1.72
SSBP4-203ENST00000593641 PPP2R3CQ969Q6 453 aa25.78■■□□□ 1.72
SSBP4-203ENST00000593641 LRFN2Q9ULH4 789 aa25.78■■□□□ 1.72
SSBP4-203ENST00000593641 GINS2Q9Y248 185 aa25.78■■□□□ 1.72
SSBP4-203ENST00000593641 MUC6Q6W4X9 2439 aa25.78■■□□□ 1.72
SSBP4-203ENST00000593641 IGKV6D-21A0A0A0MT36 114 aa25.77■■□□□ 1.72
SSBP4-203ENST00000593641 HYAL1Q12794 435 aa25.77■■□□□ 1.72
SSBP4-203ENST00000593641 CTC1Q2NKJ3 1217 aa25.77■■□□□ 1.72
SSBP4-203ENST00000593641 PAN2Q504Q3 1202 aaKnown RBP25.77■■□□□ 1.72
SSBP4-203ENST00000593641 NAALADL2Q58DX5 795 aa25.77■■□□□ 1.72
SSBP4-203ENST00000593641 PLA2G4DQ86XP0 818 aa25.77■■□□□ 1.72
SSBP4-203ENST00000593641 RASEFQ8IZ41 740 aa25.77■■□□□ 1.72
SSBP4-203ENST00000593641 ATP8B4Q8TF62 1192 aa25.77■■□□□ 1.72
SSBP4-203ENST00000593641 ALG13Q9NP73 1137 aaKnown RBP25.77■■□□□ 1.72
SSBP4-203ENST00000593641 PLAGL2Q9UPG8 496 aa25.77■■□□□ 1.72
SSBP4-203ENST00000593641 C5orf42Q9H799 3197 aa25.77■■□□□ 1.72
SSBP4-203ENST00000593641 CCDC196A0A1B0GTZ2 297 aa25.76■■□□□ 1.71
SSBP4-203ENST00000593641 CCNE2O96020 404 aa25.76■■□□□ 1.71
SSBP4-203ENST00000593641 KLRC1P26715 233 aa25.76■■□□□ 1.71
SSBP4-203ENST00000593641 CDC27P30260 824 aa25.76■■□□□ 1.71
SSBP4-203ENST00000593641 LTBRP36941 435 aa25.76■■□□□ 1.71
SSBP4-203ENST00000593641 ZP2Q05996 745 aa25.76■■□□□ 1.71
SSBP4-203ENST00000593641 NFX1Q12986 1120 aaKnown RBP25.76■■□□□ 1.71
SSBP4-203ENST00000593641 PFKFB3Q16875 520 aaPredicted RBP25.76■■□□□ 1.71
SSBP4-203ENST00000593641 JAKMIP3Q5VZ66 844 aa25.76■■□□□ 1.71
SSBP4-203ENST00000593641 MIS18BP1Q6P0N0 1132 aa25.76■■□□□ 1.71
SSBP4-203ENST00000593641 ABHD15Q6UXT9 468 aa25.76■■□□□ 1.71
SSBP4-203ENST00000593641 CENPQQ7L2Z9 268 aaPredicted RBP25.76■■□□□ 1.71
SSBP4-203ENST00000593641 ZNF302Q9NR11 478 aa25.76■■□□□ 1.71
SSBP4-203ENST00000593641 COL1A2P08123 1366 aa25.76■■□□□ 1.71
SSBP4-203ENST00000593641 FNDC1Q4ZHG4 1894 aaPredicted RBP25.75■■□□□ 1.71
SSBP4-203ENST00000593641 PRR33A8MZF0 331 aa25.75■■□□□ 1.71
SSBP4-203ENST00000593641 CDC45O75419 566 aa25.75■■□□□ 1.71
SSBP4-203ENST00000593641 IBSPP21815 317 aaPredicted RBP25.75■■□□□ 1.71
SSBP4-203ENST00000593641 METAP2P50579 478 aaKnown RBP eCLIP25.75■■□□□ 1.71
SSBP4-203ENST00000593641 TMEM266Q2M3C6 531 aa25.75■■□□□ 1.71
SSBP4-203ENST00000593641 PDXDC2PQ6P474 469 aa25.75■■□□□ 1.71
SSBP4-203ENST00000593641 FAM43BQ6ZT52 329 aaPredicted RBP25.75■■□□□ 1.71
SSBP4-203ENST00000593641 CCDC60Q8IWA6 550 aaPredicted RBP25.75■■□□□ 1.71
SSBP4-203ENST00000593641 ADHFE1Q8IWW8 467 aa25.75■■□□□ 1.71
SSBP4-203ENST00000593641 CRIPAKQ8N1N5 446 aa25.75■■□□□ 1.71
SSBP4-203ENST00000593641 CCDC12Q8WUD4 166 aaPredicted RBP25.75■■□□□ 1.71
SSBP4-203ENST00000593641 IGFLR1Q9H665 355 aa25.75■■□□□ 1.71
SSBP4-203ENST00000593641 FAM217BQ9NTX9 383 aaPredicted RBP25.75■■□□□ 1.71
SSBP4-203ENST00000593641 FAM86B1E9PN63 330 aa25.74■■□□□ 1.71
SSBP4-203ENST00000593641 IPO5O00410 1097 aaKnown RBP25.74■■□□□ 1.71
SSBP4-203ENST00000593641 DCXO43602 365 aa25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms