RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 IL17RAQ96F46 866 aa12.42□□□□□ -0.42
LIG3-214ENST00000592244 TEKT3Q9BXF9 490 aa12.42□□□□□ -0.42
LIG3-214ENST00000592244 FTHL17Q9BXU8 183 aa12.42□□□□□ -0.42
LIG3-214ENST00000592244 FAM49AQ9H0Q0 323 aaPredicted RBP12.42□□□□□ -0.42
LIG3-214ENST00000592244 NRBP2Q9NSY0 501 aa12.42□□□□□ -0.42
LIG3-214ENST00000592244 CYP3A7-CYP3A51PA0A087WV96 503 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 MAGEB2O15479 319 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 MARCH6O60337 910 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 CHRNA1P02708 482 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 GHRP10912 638 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 CYP3A7P24462 503 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 KLRC1P26715 233 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 TMOD1P28289 359 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 DEFB103AP81534 67 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 TAP1Q03518 808 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 Q4G0T1 1027 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 MARCH8Q5T0T0 291 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 MTHFD1LQ6UB35 978 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 TSHZ1Q6ZSZ6 1077 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 CCDC60Q8IWA6 550 aaPredicted RBP12.41□□□□□ -0.42
LIG3-214ENST00000592244 ARNTL2Q8WYA1 636 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 TGS1Q96RS0 853 aaKnown RBP12.41□□□□□ -0.42
LIG3-214ENST00000592244 YME1L1Q96TA2 773 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 PHF20Q9BVI0 1012 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 TANC1Q9C0D5 1861 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 DISC1Q9NRI5 854 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 DDX25Q9UHL0 483 aaKnown RBP12.41□□□□□ -0.42
LIG3-214ENST00000592244 MAFBQ9Y5Q3 323 aaPredicted RBP12.41□□□□□ -0.42
LIG3-214ENST00000592244 TRPV2Q9Y5S1 764 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 CDY2AQ9Y6F7 541 aa12.41□□□□□ -0.42
LIG3-214ENST00000592244 MSH4O15457 936 aa12.4□□□□□ -0.42
LIG3-214ENST00000592244 DKC1O60832 514 aaKnown RBP eCLIP12.4□□□□□ -0.42
LIG3-214ENST00000592244 FBXO47Q5MNV8 452 aa12.4□□□□□ -0.42
LIG3-214ENST00000592244 FAM117BQ6P1L5 589 aa12.4□□□□□ -0.42
LIG3-214ENST00000592244 NEK8Q86SG6 692 aa12.4□□□□□ -0.42
LIG3-214ENST00000592244 IL27Q8NEV9 243 aa12.4□□□□□ -0.42
LIG3-214ENST00000592244 SLC5A5Q92911 643 aa12.4□□□□□ -0.42
LIG3-214ENST00000592244 GTF3C6Q969F1 213 aa12.4□□□□□ -0.42
LIG3-214ENST00000592244 TOP1MTQ969P6 601 aa12.4□□□□□ -0.42
LIG3-214ENST00000592244 SAMD11Q96NU1 681 aa12.4□□□□□ -0.42
LIG3-214ENST00000592244 UPF2Q9HAU5 1272 aaKnown RBP12.4□□□□□ -0.42
LIG3-214ENST00000592244 GABBR1Q9UBS5 961 aa12.4□□□□□ -0.42
LIG3-214ENST00000592244 COL6A3P12111 3177 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 M0R2N6 131 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 CHMP2AO43633 222 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 BAG4O95429 457 aaKnown RBP12.39□□□□□ -0.43
LIG3-214ENST00000592244 KRT2P35908 639 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 MGAT3Q09327 533 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 PAK2Q13177 524 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 LPIN1Q14693 890 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 LETM2Q2VYF4 491 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 PPP4R3AQ6IN85 833 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.39□□□□□ -0.43
LIG3-214ENST00000592244 MIER3Q7Z3K6 550 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 PIAS4Q8N2W9 510 aaPredicted RBP12.39□□□□□ -0.43
LIG3-214ENST00000592244 METTL13Q8N6R0 699 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 PPM1EQ8WY54 764 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 SYMPKQ92797 1274 aaKnown RBP12.39□□□□□ -0.43
LIG3-214ENST00000592244 LENG9Q96B70 501 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 FAM20AQ96MK3 541 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 UIMC1Q96RL1 719 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 MAP7D2Q96T17 732 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 CELF4Q9BZC1 486 aaKnown RBP12.39□□□□□ -0.43
LIG3-214ENST00000592244 LMCD1Q9NZU5 365 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 KCNJ14Q9UNX9 436 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 LIMCH1Q9UPQ0 1083 aa12.39□□□□□ -0.43
LIG3-214ENST00000592244 KDM3AQ9Y4C1 1321 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 DLL1O00548 723 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 ADAMTS3O15072 1205 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 UPP2O95045 317 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 OATP04181 439 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 STAG3L1P0CL83 205 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 POU3F3P20264 500 aaPredicted RBP12.38□□□□□ -0.43
LIG3-214ENST00000592244 ERVK-21P61565 698 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 HTRA4P83105 476 aaPredicted RBP12.38□□□□□ -0.43
LIG3-214ENST00000592244 CDC42EP1Q00587 391 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 SAFBQ15424 915 aaKnown RBP eCLIP12.38□□□□□ -0.43
LIG3-214ENST00000592244 INF2Q27J81 1249 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 AAK1Q2M2I8 961 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 MICALL1Q8N3F8 863 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 TRAPPC12Q8WVT3 735 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 ZSCAN31Q96LW9 406 aaPredicted RBP12.38□□□□□ -0.43
LIG3-214ENST00000592244 AIFM3Q96NN9 605 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 CERS4Q9HA82 394 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 GINS2Q9Y248 185 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 RWDD3Q9Y3V2 267 aa12.38□□□□□ -0.43
LIG3-214ENST00000592244 TRIP12Q14669 1992 aaPredicted RBP12.38□□□□□ -0.43
LIG3-214ENST00000592244 IGSF9BQ9UPX0 1349 aa12.37□□□□□ -0.43
LIG3-214ENST00000592244 SCN5AQ14524 2016 aa12.37□□□□□ -0.43
LIG3-214ENST00000592244 LINC01553A4QN01 128 aa12.37□□□□□ -0.43
LIG3-214ENST00000592244 TBX3O15119 743 aa12.37□□□□□ -0.43
LIG3-214ENST00000592244 GPR182O15218 404 aa12.37□□□□□ -0.43
LIG3-214ENST00000592244 CCNT1O60563 726 aaKnown RBP12.37□□□□□ -0.43
LIG3-214ENST00000592244 PSMD10O75832 226 aa12.37□□□□□ -0.43
LIG3-214ENST00000592244 TDP2O95551 362 aa12.37□□□□□ -0.43
LIG3-214ENST00000592244 DNM2P50570 870 aa12.37□□□□□ -0.43
LIG3-214ENST00000592244 PRKCEQ02156 737 aa12.37□□□□□ -0.43
LIG3-214ENST00000592244 TBC1D8BQ0IIM8 1120 aa12.37□□□□□ -0.43
LIG3-214ENST00000592244 MKRN4PQ13434 485 aaPredicted RBP12.37□□□□□ -0.43
LIG3-214ENST00000592244 ADGRE1Q14246 886 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms