RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 THPOP40225 353 aa13.4□□□□□ -0.26
LIG3-213ENST00000590630 SHHQ15465 462 aa13.4□□□□□ -0.26
LIG3-213ENST00000590630 MARCH8Q5T0T0 291 aa13.4□□□□□ -0.26
LIG3-213ENST00000590630 LARP1BQ659C4 914 aaKnown RBP13.4□□□□□ -0.26
LIG3-213ENST00000590630 RPAINQ86UA6 219 aa13.4□□□□□ -0.26
LIG3-213ENST00000590630 WNT8BQ93098 351 aa13.4□□□□□ -0.26
LIG3-213ENST00000590630 LOXHD1Q8IVV2 1947 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 ATP2B1P20020 1258 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 ATP4AP20648 1035 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 MCM7P33993 719 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 IGBP1P78318 339 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 LRIT3Q3SXY7 679 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 ZNF484Q5JVG2 852 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 TTC38Q5R3I4 469 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 TMEM240Q5SV17 173 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 C9orf50Q5SZB4 431 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 ZNF618Q5T7W0 954 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 MCTP1Q6DN14 999 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 C16orf59Q7L2K0 433 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 RSPH3Q86UC2 560 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 HSCBQ8IWL3 235 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 RNPC3Q96LT9 517 aaKnown RBP13.39□□□□□ -0.27
LIG3-213ENST00000590630 MTMR9Q96QG7 549 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.39□□□□□ -0.27
LIG3-213ENST00000590630 PCDHA12Q9UN75 941 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 CEP131Q9UPN4 1083 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 SIP14410 1827 aa13.39□□□□□ -0.27
LIG3-213ENST00000590630 RSPH10B2B2RC85 870 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 EML1O00423 815 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 ZNF862O60290 1169 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 FGBP02675 491 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 OATP04181 439 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 RSPH10BP0C881 870 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 ACRP10323 421 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 PRKCEQ02156 737 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 SPIRE1Q08AE8 756 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 UGCGQ16739 394 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 TRAF7Q6Q0C0 670 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 ZNF365Q70YC5 407 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 DEFB128Q7Z7B8 93 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 MTIF3Q9H2K0 278 aaKnown RBP13.38□□□□□ -0.27
LIG3-213ENST00000590630 TTC12Q9H892 705 aaPredicted RBP13.38□□□□□ -0.27
LIG3-213ENST00000590630 NRBP2Q9NSY0 501 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 PCDHA2Q9Y5H9 948 aa13.38□□□□□ -0.27
LIG3-213ENST00000590630 ZBTB42B2RXF5 422 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 DKC1O60832 514 aaKnown RBP eCLIP13.37□□□□□ -0.27
LIG3-213ENST00000590630 CXCL10P02778 98 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 P4HBP07237 508 aaKnown RBP13.37□□□□□ -0.27
LIG3-213ENST00000590630 ACTN1P12814 892 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 KLRC1P26715 233 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 TXKP42681 527 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 QARSP47897 775 aaKnown RBP13.37□□□□□ -0.27
LIG3-213ENST00000590630 PSMC5P62195 406 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 EPHA7Q15375 998 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 RILPL1Q5EBL4 403 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 NCAPH2Q6IBW4 605 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 MTHFD1LQ6UB35 978 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 RUFY4Q6ZNE9 571 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 TRAPPC12Q8WVT3 735 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 HERVK_113Q902F9 699 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 VWCEQ96DN2 955 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 TMEM60Q9H2L4 133 aa13.37□□□□□ -0.27
LIG3-213ENST00000590630 ARID2Q68CP9 1835 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 MICAL3Q7RTP6 2002 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 SMIM35A0A1B0GVV1 85 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 MAGEB2O15479 319 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 NBNO60934 754 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 OR52Z1P0C646 297 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 TOB1P50616 345 aaPredicted RBP13.36□□□□□ -0.27
LIG3-213ENST00000590630 FXR1P51114 621 aaKnown RBP eCLIP13.36□□□□□ -0.27
LIG3-213ENST00000590630 GPNMBQ14956 572 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 ZNF174Q15697 407 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 XKR3Q5GH77 459 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 FAM26DQ5JW98 314 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 RASIP1Q5U651 963 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 OTOP2Q7RTS6 562 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 TRMT1LQ7Z2T5 733 aaKnown RBP13.36□□□□□ -0.27
LIG3-213ENST00000590630 NME8Q8N427 588 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 BANK1Q8NDB2 785 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 NEK9Q8TD19 979 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 DNAJB3Q8WWF6 145 aa13.36□□□□□ -0.27
LIG3-213ENST00000590630 NIFKQ9BYG3 293 aaKnown RBP13.36□□□□□ -0.27
LIG3-213ENST00000590630 FTOQ9C0B1 505 aaKnown RBP eCLIP13.36□□□□□ -0.27
LIG3-213ENST00000590630 CHD9Q3L8U1 2897 aa13.35□□□□□ -0.27
LIG3-213ENST00000590630 LAD1O00515 517 aa13.35□□□□□ -0.27
LIG3-213ENST00000590630 BAIAP3O94812 1187 aa13.35□□□□□ -0.27
LIG3-213ENST00000590630 C22orf31O95567 290 aa13.35□□□□□ -0.27
LIG3-213ENST00000590630 CTSHP09668 335 aa13.35□□□□□ -0.27
LIG3-213ENST00000590630 MBTPS1Q14703 1052 aa13.35□□□□□ -0.27
LIG3-213ENST00000590630 IER5Q5VY09 327 aa13.35□□□□□ -0.27
LIG3-213ENST00000590630 BRAPQ7Z569 592 aa13.35□□□□□ -0.27
LIG3-213ENST00000590630 ZBTB10Q96DT7 871 aa13.35□□□□□ -0.27
LIG3-213ENST00000590630 LXNQ9BS40 222 aa13.35□□□□□ -0.27
LIG3-213ENST00000590630 FAM49AQ9H0Q0 323 aaPredicted RBP13.35□□□□□ -0.27
LIG3-213ENST00000590630 SEPT9Q9UHD8 586 aaPredicted RBP13.35□□□□□ -0.27
LIG3-213ENST00000590630 PCDHB6Q9Y5E3 794 aa13.35□□□□□ -0.27
LIG3-213ENST00000590630 GBF1Q92538 1859 aa13.35□□□□□ -0.27
LIG3-213ENST00000590630 VPS37CA5D8V6 355 aaPredicted RBP13.34□□□□□ -0.27
LIG3-213ENST00000590630 M0QZ92 97 aa13.34□□□□□ -0.27
LIG3-213ENST00000590630 STBD1O95210 358 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms