RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 ZP2Q05996 745 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 DLX2Q07687 328 aaPredicted RBP13.42□□□□□ -0.26
CLIP3-204ENST00000590559 HYAL1Q12794 435 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 CEP55Q53EZ4 464 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 IER5Q5VY09 327 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 TRAPPC12Q8WVT3 735 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 P2RX5Q93086 422 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 FTHL17Q9BXU8 183 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 TMX1Q9H3N1 280 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 RBM28Q9NW13 759 aaKnown RBP13.42□□□□□ -0.26
CLIP3-204ENST00000590559 PADI3Q9ULW8 664 aa13.42□□□□□ -0.26
CLIP3-204ENST00000590559 hCG_1984214I3L0E3 225 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 DHX15O43143 795 aaKnown RBP13.41□□□□□ -0.26
CLIP3-204ENST00000590559 CCNE2O96020 404 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 DNAJB1P25685 340 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 STAT5BP51692 787 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 BTG3Q14201 252 aaPredicted RBP13.41□□□□□ -0.26
CLIP3-204ENST00000590559 SMAD2Q15796 467 aaKnown RBP13.41□□□□□ -0.26
CLIP3-204ENST00000590559 ADCK5Q3MIX3 580 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 NAALADL2Q58DX5 795 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 BMP2KLQ5H9B9 411 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 MTHFD1LQ6UB35 978 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 ABHD15Q6UXT9 468 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 FAM43BQ6ZT52 329 aaPredicted RBP13.41□□□□□ -0.26
CLIP3-204ENST00000590559 NIPA1Q7RTP0 329 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 CMTR2Q8IYT2 770 aaKnown RBP13.41□□□□□ -0.26
CLIP3-204ENST00000590559 RASEFQ8IZ41 740 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 NME8Q8N427 588 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 ZNF713Q8N859 430 aaPredicted RBP13.41□□□□□ -0.26
CLIP3-204ENST00000590559 PGBD1Q96JS3 809 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 NEK1Q96PY6 1258 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 ANO3Q9BYT9 981 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 CELF4Q9BZC1 486 aaKnown RBP13.41□□□□□ -0.26
CLIP3-204ENST00000590559 ANO2Q9NQ90 1003 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 CLDND1Q9NY35 253 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 BARHL2Q9NY43 387 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 PLAGL2Q9UPG8 496 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 HCN4Q9Y3Q4 1203 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 TRPV2Q9Y5S1 764 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 MRPL42Q9Y6G3 142 aaKnown RBP13.41□□□□□ -0.26
CLIP3-204ENST00000590559 MUC6Q6W4X9 2439 aa13.41□□□□□ -0.26
CLIP3-204ENST00000590559 ZNF318Q5VUA4 2279 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 IGLV3-22A0A075B6J6 115 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 ZBTB42B2RXF5 422 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 TBX10O75333 385 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 CDC27P30260 824 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 GTF2F1P35269 517 aaKnown RBP eCLIP13.4□□□□□ -0.26
CLIP3-204ENST00000590559 SLC26A2P50443 739 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 RCAN1P53805 252 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 NAPAP54920 295 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 AP3B2Q13367 1082 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 ADAM15Q13444 863 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 DHX32Q7L7V1 743 aaKnown RBP13.4□□□□□ -0.26
CLIP3-204ENST00000590559 NPAS4Q8IUM7 802 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 ADHFE1Q8IWW8 467 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 SPPL3Q8TCT6 385 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 TNPO1Q92973 898 aaKnown RBP13.4□□□□□ -0.26
CLIP3-204ENST00000590559 SDF4Q9BRK5 362 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 FAM49AQ9H0Q0 323 aaPredicted RBP13.4□□□□□ -0.26
CLIP3-204ENST00000590559 AZI2Q9H6S1 392 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 ALG13Q9NP73 1137 aaKnown RBP13.4□□□□□ -0.26
CLIP3-204ENST00000590559 TMEM260Q9NX78 707 aa13.4□□□□□ -0.26
CLIP3-204ENST00000590559 V9GY48 417 aaPredicted RBP13.4□□□□□ -0.26
CLIP3-204ENST00000590559 SMCO2A6NFE2 343 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 FAM86B1E9PN63 330 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 ADAMTS3O15072 1205 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 ZBTB43O43298 467 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 MBTPS2O43462 519 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 ITGB1P05556 798 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 CYP3A4P08684 503 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 FAM86B2P0C5J1 330 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 ALADP13716 330 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 ATP4AP20648 1035 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 ADCY7P51828 1080 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 TMEM62Q0P6H9 643 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 RTN1Q16799 776 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 CCDC60Q8IWA6 550 aaPredicted RBP13.39□□□□□ -0.27
CLIP3-204ENST00000590559 KIAA0319LQ8IZA0 1049 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 MSLNLQ96KJ4 702 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 TCEANC2Q96MN5 208 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 TRPC6Q9Y210 931 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 FAM50BQ9Y247 325 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 NID2Q14112 1375 aa13.39□□□□□ -0.27
CLIP3-204ENST00000590559 COL1A2P08123 1366 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 LINC01565O15544 149 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 DCXO43602 365 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 HBP1O60381 514 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 MGEA5O60502 916 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 EYA4O95677 639 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 SCG2P13521 617 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 KLRC1P26715 233 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 SSTR3P32745 418 aaPredicted RBP13.38□□□□□ -0.27
CLIP3-204ENST00000590559 IRS1P35568 1242 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 PAK2Q13177 524 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 RNF20Q5VTR2 975 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 SYNE3Q6ZMZ3 975 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 ADGRD2Q7Z7M1 963 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 SKAP1Q86WV1 359 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 ATP8B4Q8TF62 1192 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 TMEM40Q8WWA1 233 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms