RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 CAPN2P17655 700 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 CYP11B2P19099 503 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 ANXA13P27216 316 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 ARHGAP25P42331 645 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 CLCN6P51797 869 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 CACNB3P54284 484 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 CBX1P83916 185 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 NAA30Q147X3 362 aaPredicted RBP11.7□□□□□ -0.54
ZNF540-208ENST00000589857 SPDYE2Q495Y8 402 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 ZCWPW2Q504Y3 356 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 NCAPH2Q6IBW4 605 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 ZC3H3Q8IXZ2 948 aaKnown RBP11.7□□□□□ -0.54
ZNF540-208ENST00000589857 CCDC155Q8N6L0 562 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 SYT2Q8N9I0 419 aaPredicted RBP11.7□□□□□ -0.54
ZNF540-208ENST00000589857 TRIM58Q8NG06 486 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 RUBCNQ92622 972 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 SECISBP2LQ93073 1101 aaKnown RBP11.7□□□□□ -0.54
ZNF540-208ENST00000589857 OPTNQ96CV9 577 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 CLMNQ96JQ2 1002 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 HTATIP2Q9BUP3 242 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 WDR11Q9BZH6 1224 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 MMRN2Q9H8L6 949 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 METTL14Q9HCE5 456 aaKnown RBP11.7□□□□□ -0.54
ZNF540-208ENST00000589857 EMILIN3Q9NT22 766 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 KCND2Q9NZV8 630 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 SEL1LQ9UBV2 794 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 ZNF70Q9UC06 446 aaPredicted RBP11.7□□□□□ -0.54
ZNF540-208ENST00000589857 COLQQ9Y215 455 aaPredicted RBP11.7□□□□□ -0.54
ZNF540-208ENST00000589857 SIK3Q9Y2K2 1263 aa11.7□□□□□ -0.54
ZNF540-208ENST00000589857 POTEB3A0JP26 581 aa11.69□□□□□ -0.54
ZNF540-208ENST00000589857 SLC16A3O15427 465 aaKnown RBP11.69□□□□□ -0.54
ZNF540-208ENST00000589857 EYA4O95677 639 aa11.69□□□□□ -0.54
ZNF540-208ENST00000589857 CETPP11597 493 aa11.69□□□□□ -0.54
ZNF540-208ENST00000589857 SLC12A3P55017 1021 aa11.69□□□□□ -0.54
ZNF540-208ENST00000589857 MAP9Q49MG5 647 aa11.69□□□□□ -0.54
ZNF540-208ENST00000589857 NBPF12Q5TAG4 269 aaPredicted RBP11.69□□□□□ -0.54
ZNF540-208ENST00000589857 UTP14CQ5TAP6 766 aaKnown RBP11.69□□□□□ -0.54
ZNF540-208ENST00000589857 POTEBQ6S5H4 581 aa11.69□□□□□ -0.54
ZNF540-208ENST00000589857 SIAH1Q8IUQ4 282 aa11.69□□□□□ -0.54
ZNF540-208ENST00000589857 HNRNPLLQ8WVV9 542 aaKnown RBP11.69□□□□□ -0.54
ZNF540-208ENST00000589857 PRMT6Q96LA8 375 aaPredicted RBP11.69□□□□□ -0.54
ZNF540-208ENST00000589857 ELP3Q9H9T3 547 aa11.69□□□□□ -0.54
ZNF540-208ENST00000589857 FAM53CQ9NYF3 392 aa11.69□□□□□ -0.54
ZNF540-208ENST00000589857 ZBTB21Q9ULJ3 1066 aa11.69□□□□□ -0.54
ZNF540-208ENST00000589857 PRR12Q9ULL5 1215 aa11.69□□□□□ -0.54
ZNF540-208ENST00000589857 GUCA1BQ9UMX6 200 aa11.69□□□□□ -0.54
ZNF540-208ENST00000589857 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.69□□□□□ -0.54
ZNF540-208ENST00000589857 CCL15-CCL14A0A0B4J2E2 113 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 PDXKO00764 312 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 EIF3DO15371 548 aaKnown RBP eCLIP11.68□□□□□ -0.54
ZNF540-208ENST00000589857 AKR1B10O60218 316 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 EIF3JO75822 258 aaKnown RBP11.68□□□□□ -0.54
ZNF540-208ENST00000589857 LCA5LO95447 670 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 ASNSP08243 561 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 CCL15Q16663 113 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 BMT2Q1RMZ1 405 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 USH1GQ495M9 461 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 C10orf76Q5T2E6 689 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 PAPD7Q5XG87 772 aaKnown RBP11.68□□□□□ -0.54
ZNF540-208ENST00000589857 PDXDC1Q6P996 788 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 WDR59Q6PJI9 974 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 KCNK18Q7Z418 384 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 FRMD5Q7Z6J6 570 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 MCF2L2Q86YR7 1114 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 MSL3Q8N5Y2 521 aaKnown RBP11.68□□□□□ -0.54
ZNF540-208ENST00000589857 MSANTD4Q8NCY6 345 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 GOLGA5Q8TBA6 731 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 DPF3Q92784 378 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 CHP1Q99653 195 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 ARID3AQ99856 593 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 IFIH1Q9BYX4 1025 aaKnown RBP11.68□□□□□ -0.54
ZNF540-208ENST00000589857 RANBP17Q9H2T7 1088 aaKnown RBP11.68□□□□□ -0.54
ZNF540-208ENST00000589857 VCPKMTQ9H867 229 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 MAP3K20Q9NYL2 800 aaKnown RBP11.68□□□□□ -0.54
ZNF540-208ENST00000589857 TRAF3IP3Q9Y228 551 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 NR2E3Q9Y5X4 410 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 SAR1BQ9Y6B6 198 aa11.68□□□□□ -0.54
ZNF540-208ENST00000589857 BZW2Q9Y6E2 419 aaKnown RBP11.68□□□□□ -0.54
ZNF540-208ENST00000589857 SPDYE4A6NLX3 237 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 FAM196BA6NMK8 535 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 TCP10L2B9ZVM9 353 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 E9PMD0 336 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 RNF225M0QZC1 329 aaPredicted RBP11.67□□□□□ -0.54
ZNF540-208ENST00000589857 TLR2O60603 784 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 MED24O75448 989 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 ZRANB2O95218 330 aaKnown RBP eCLIP11.67□□□□□ -0.54
ZNF540-208ENST00000589857 SERPING1P05155 500 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 FDX1P10109 184 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 EPB41P11171 864 aaKnown RBP11.67□□□□□ -0.54
ZNF540-208ENST00000589857 SPIRE1Q08AE8 756 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 PPP2R5CQ13362 524 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 ADAM9Q13443 819 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 NFIL3Q16649 462 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 SFMBT2Q5VUG0 894 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 CC2D1AQ6P1N0 951 aaPredicted RBP11.67□□□□□ -0.54
ZNF540-208ENST00000589857 NIPA1Q7RTP0 329 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 TRAPPC11Q7Z392 1133 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 CATSPER3Q86XQ3 398 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 TRIM59Q8IWR1 403 aa11.67□□□□□ -0.54
ZNF540-208ENST00000589857 RNF10Q8N5U6 811 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms