RNA–Protein interactions for RNA: ENST00000583328.5

TOP3A-215, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-215ENST00000583328 FOXK2Q01167 660 aa14.12□□□□□ -0.15
TOP3A-215ENST00000583328 TROAPQ12815 778 aa14.12□□□□□ -0.15
TOP3A-215ENST00000583328 NFX1Q12986 1120 aaKnown RBP14.12□□□□□ -0.15
TOP3A-215ENST00000583328 PTPN21Q16825 1174 aa14.12□□□□□ -0.15
TOP3A-215ENST00000583328 DUSP6Q16828 381 aa14.12□□□□□ -0.15
TOP3A-215ENST00000583328 CATIPQ7Z7H3 387 aa14.12□□□□□ -0.15
TOP3A-215ENST00000583328 RRP36Q96EU6 259 aaKnown RBP14.12□□□□□ -0.15
TOP3A-215ENST00000583328 CELF4Q9BZC1 486 aaKnown RBP14.12□□□□□ -0.15
TOP3A-215ENST00000583328 RWDD1Q9H446 243 aaPredicted RBP14.12□□□□□ -0.15
TOP3A-215ENST00000583328 OSBPL3Q9H4L5 887 aa14.12□□□□□ -0.15
TOP3A-215ENST00000583328 AZI2Q9H6S1 392 aa14.12□□□□□ -0.15
TOP3A-215ENST00000583328 SENP2Q9HC62 589 aa14.12□□□□□ -0.15
TOP3A-215ENST00000583328 TRPC6Q9Y210 931 aa14.12□□□□□ -0.15
TOP3A-215ENST00000583328 CACNA1HO95180 2353 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 TBKBP1A7MCY6 615 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 PIK3CDO00329 1044 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 FGF18O76093 207 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 SRGAP2BP0DMP2 458 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 ITGB5P18084 799 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 SARSP49591 514 aaKnown RBP14.11□□□□□ -0.15
TOP3A-215ENST00000583328 NUBP1P53384 320 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 ERVFC1P60507 584 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 SART3Q15020 963 aaKnown RBP14.11□□□□□ -0.15
TOP3A-215ENST00000583328 PDE12Q6L8Q7 609 aaKnown RBP14.11□□□□□ -0.15
TOP3A-215ENST00000583328 THNSL1Q8IYQ7 743 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 VN1R2Q8NFZ6 395 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 RIPOR3Q96MK2 946 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 TMEM260Q9NX78 707 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 PCDHA2Q9Y5H9 948 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 IGSF9BQ9UPX0 1349 aa14.11□□□□□ -0.15
TOP3A-215ENST00000583328 BAZ2BQ9UIF8 2168 aaKnown RBP14.1□□□□□ -0.15
TOP3A-215ENST00000583328 ZFHX2Q9C0A1 2572 aaPredicted RBP14.1□□□□□ -0.15
TOP3A-215ENST00000583328 SP100P23497 879 aaPredicted RBP14.1□□□□□ -0.15
TOP3A-215ENST00000583328 TECP42680 631 aa14.1□□□□□ -0.15
TOP3A-215ENST00000583328 KRT76Q01546 638 aa14.1□□□□□ -0.15
TOP3A-215ENST00000583328 MTMR1Q13613 665 aa14.1□□□□□ -0.15
TOP3A-215ENST00000583328 TMEM266Q2M3C6 531 aa14.1□□□□□ -0.15
TOP3A-215ENST00000583328 RALYLQ86SE5 291 aaKnown RBP14.1□□□□□ -0.15
TOP3A-215ENST00000583328 CHD1LQ86WJ1 897 aa14.1□□□□□ -0.15
TOP3A-215ENST00000583328 NME8Q8N427 588 aa14.1□□□□□ -0.15
TOP3A-215ENST00000583328 PCYT2Q99447 389 aa14.1□□□□□ -0.15
TOP3A-215ENST00000583328 APOL5Q9BWW9 433 aa14.1□□□□□ -0.15
TOP3A-215ENST00000583328 S1PR5Q9H228 398 aa14.1□□□□□ -0.15
TOP3A-215ENST00000583328 TMX1Q9H3N1 280 aa14.1□□□□□ -0.15
TOP3A-215ENST00000583328 RNF216Q9NWF9 866 aaPredicted RBP14.1□□□□□ -0.15
TOP3A-215ENST00000583328 SEC63Q9UGP8 760 aaKnown RBP14.1□□□□□ -0.15
TOP3A-215ENST00000583328 GINS2Q9Y248 185 aa14.1□□□□□ -0.15
TOP3A-215ENST00000583328 UBIAD1Q9Y5Z9 338 aa14.1□□□□□ -0.15
TOP3A-215ENST00000583328 U3KPZ7 1027 aaPredicted RBP14.1□□□□□ -0.15
TOP3A-215ENST00000583328 ATG2AQ2TAZ0 1938 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 C5orf42Q9H799 3197 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 KAT6AQ92794 2004 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 SMIM35A0A1B0GVV1 85 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 DENND3A2RUS2 1198 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 MAFGO15525 162 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 GALR2O43603 387 aaPredicted RBP14.09□□□□□ -0.15
TOP3A-215ENST00000583328 PDGFBP01127 241 aaPredicted RBP14.09□□□□□ -0.15
TOP3A-215ENST00000583328 FAM102BQ5T8I3 360 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 PLPP4Q5VZY2 271 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 ANKRD54Q6NXT1 300 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 LLGL2Q6P1M3 1020 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 COLGALT1Q8NBJ5 622 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 CTCFLQ8NI51 663 aaPredicted RBP14.09□□□□□ -0.15
TOP3A-215ENST00000583328 TRAPPC12Q8WVT3 735 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 PSTPIP2Q9H939 334 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 JPH1Q9HDC5 661 aaPredicted RBP14.09□□□□□ -0.15
TOP3A-215ENST00000583328 JADE2Q9NQC1 790 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 TYW1Q9NV66 732 aaKnown RBP14.09□□□□□ -0.15
TOP3A-215ENST00000583328 PUF60Q9UHX1 559 aaKnown RBP14.09□□□□□ -0.15
TOP3A-215ENST00000583328 KDM3AQ9Y4C1 1321 aa14.09□□□□□ -0.15
TOP3A-215ENST00000583328 FSCN2O14926 492 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 MGEA5O60502 916 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 RPS6KA5O75582 802 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 KIF5BP33176 963 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 STAT5BP51692 787 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 APOBRQ0VD83 1088 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 PLCB4Q15147 1175 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 ODR4Q5SWX8 454 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 SYCE2Q6PIF2 218 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 TMEM184AQ6ZMB5 413 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 SMC5Q8IY18 1101 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 KREMEN2Q8NCW0 462 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 NCOA7Q8NI08 942 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 ADAM2Q99965 735 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 SPZ1Q9BXG8 430 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 IL25Q9H293 177 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 ERVK-5Q9HDB9 667 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 TSHZ2Q9NRE2 1034 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 C1orf112Q9NSG2 853 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 SLC9A2Q9UBY0 812 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 NR2E1Q9Y466 385 aa14.08□□□□□ -0.16
TOP3A-215ENST00000583328 TRIOO75962 3097 aa14.07□□□□□ -0.16
TOP3A-215ENST00000583328 SPDYE3A6NKU9 549 aa14.07□□□□□ -0.16
TOP3A-215ENST00000583328 PROB1E7EW31 1015 aa14.07□□□□□ -0.16
TOP3A-215ENST00000583328 IGHDP01880 384 aa14.07□□□□□ -0.16
TOP3A-215ENST00000583328 CYP21A2P08686 494 aa14.07□□□□□ -0.16
TOP3A-215ENST00000583328 HOXB8P17481 243 aaPredicted RBP14.07□□□□□ -0.16
TOP3A-215ENST00000583328 SMARCA1P28370 1054 aa14.07□□□□□ -0.16
TOP3A-215ENST00000583328 UBE2SQ16763 222 aa14.07□□□□□ -0.16
TOP3A-215ENST00000583328 ERICH6BQ5W0A0 696 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms