RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 A0A1B0GTL3 188 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 LOC105371045A0A1W2PR82 267 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 RASSF10A6NK89 507 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 FBXO21O94952 628 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 PTGS1P23219 599 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 RPL13P26373 211 aaKnown RBP6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 CNGA1P29973 690 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 MC4RP32245 332 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 IL2P60568 153 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 RTP5Q14D33 572 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 CT47A1Q5JQC4 288 aaPredicted RBP6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 CATSPEREQ5SY80 951 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 RNF187Q5TA31 235 aaPredicted RBP6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 PRAMEF18Q5VWM3 479 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 ZNF662Q6ZS27 426 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 ERCC4Q92889 916 aaPredicted RBP6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 GPR101Q96P66 508 aaPredicted RBP6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 UCKL1Q9NWZ5 548 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 H2AFY2Q9P0M6 372 aaPredicted RBP6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 BTBD7Q9P203 1132 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 ZFP69BQ9UJL9 534 aa6.46□□□□□ -1.38
SMCHD1-204ENST00000581226 PRAMEF22A3QJZ6 481 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 CYP17A1P05093 508 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 ZSCAN22P10073 491 aaPredicted RBP6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 SARSP49591 514 aaKnown RBP6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 KPNA1P52294 538 aaPredicted RBP6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 DHCR24Q15392 516 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 PRR31Q5SQ13 230 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 CREB3L3Q68CJ9 461 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 FILIP1Q7Z7B0 1213 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 CARFQ8N187 725 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 STPG3Q8N7X2 389 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 SMC1BQ8NDV3 1235 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 ELF4Q99607 663 aaPredicted RBP6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 TACO1Q9BSH4 297 aaKnown RBP6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 SPC25Q9HBM1 224 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 INCENPQ9NQS7 918 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 TOMM22Q9NS69 142 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 ASB1Q9Y576 335 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 SPO11Q9Y5K1 396 aa6.45□□□□□ -1.38
SMCHD1-204ENST00000581226 DDX3XO00571 662 aaKnown RBP eCLIP6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 DNAJC6O75061 913 aa6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 VIL1P09327 827 aaKnown RBP6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 PTX3P26022 381 aaPredicted RBP6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 IL13P35225 146 aa6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 MLLT6P55198 1093 aaPredicted RBP6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 OCRLQ01968 901 aa6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 STRN3Q13033 797 aa6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 TRMT10BQ6PF06 316 aaKnown RBP6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 KRT26Q7Z3Y9 468 aa6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 STRA8Q7Z7C7 330 aa6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 PASD1Q8IV76 773 aa6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 EFHBQ8N7U6 833 aa6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 TP53I13Q8NBR0 393 aaPredicted RBP6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 USP7Q93009 1102 aa6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 GALNT8Q9NY28 637 aa6.44□□□□□ -1.38
SMCHD1-204ENST00000581226 GOLGA6L22H0YM25 854 aa6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 FKBP9O95302 570 aa6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 IL18BPO95998 194 aa6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 ADCYAP1R1P41586 468 aa6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 LSSP48449 732 aa6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 FNTBP49356 437 aa6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 SMAD2Q15796 467 aaKnown RBP6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 DPP8Q6V1X1 898 aaPredicted RBP6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 FKBP9P1Q75LS8 142 aa6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 C11orf74Q86VG3 221 aa6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 FAM177A1Q8N128 213 aaPredicted RBP6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 WDR48Q8TAF3 677 aa6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 L2HGDHQ9H9P8 463 aa6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 KCND1Q9NSA2 647 aa6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 SPTLC3Q9NUV7 552 aa6.43□□□□□ -1.38
SMCHD1-204ENST00000581226 MPIG6BO95866 241 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 ZNF28P17035 718 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 CANXP27824 592 aaKnown RBP6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 ECE1P42892 770 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 SLURP1P55000 103 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 LCE4AQ5TA78 99 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 MCTP2Q6DN12 878 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 LRSAM1Q6UWE0 723 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 LCNL1Q6ZST4 164 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 SIAH1Q8IUQ4 282 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 FOXRED1Q96CU9 486 aaPredicted RBP6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 TTC1Q99614 292 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 SPATA25Q9BR10 227 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 AMNQ9BXJ7 453 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 IFT22Q9H7X7 185 aa6.42□□□□□ -1.38
SMCHD1-204ENST00000581226 NEMP1O14524 444 aa6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 TGM5O43548 720 aa6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 KNG1P01042 644 aa6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 CYP1A1P04798 512 aaPredicted RBP6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 CHGBP05060 677 aa6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 COL6A1P12109 1028 aa6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 BPIP17213 487 aa6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 BMP7P18075 431 aa6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 KCNC1P48547 511 aa6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 NFKB2Q00653 900 aa6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 EPHA7Q15375 998 aa6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 KRTAP19-4Q3LI73 84 aa6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 RTN4RL1Q86UN2 441 aaPredicted RBP6.41□□□□□ -1.38
SMCHD1-204ENST00000581226 NME9Q86XW9 330 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms