RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 BBXQ8WY36 941 aaPredicted RBP17.39■□□□□ 0.37
SS18-216ENST00000580751 RNPEPQ9H4A4 650 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 HDAC6Q9UBN7 1215 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 LRWD1Q9UFC0 647 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 GTF2IRD1Q9UHL9 959 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 NRCAMQ92823 1304 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 POTEB3A0JP26 581 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 C17orf102A2RUQ5 167 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 VWA3AA6NCI4 1184 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 OATP04181 439 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 TLE2Q04725 743 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 PPFIA1Q13136 1202 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 UGCGQ16739 394 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 ADALQ6DHV7 355 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 POTEBQ6S5H4 581 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 ZNF579Q8NAF0 562 aaKnown RBP17.38■□□□□ 0.37
SS18-216ENST00000580751 BANK1Q8NDB2 785 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 EIF2AK1Q9BQI3 630 aaKnown RBP17.38■□□□□ 0.37
SS18-216ENST00000580751 LXNQ9BS40 222 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 ZSWIM4Q9H7M6 989 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 NOD1Q9Y239 953 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 WDR81Q562E7 1941 aa17.38■□□□□ 0.37
SS18-216ENST00000580751 ALPK3Q96L96 1907 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 CEP290O15078 2479 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 HBP1O60381 514 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 EVI5O60447 810 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 HOXC8P31273 242 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 CYP4A11Q02928 519 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 IL17AQ16552 155 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 XKR3Q5GH77 459 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 KRI1Q8N9T8 703 aaKnown RBP17.37■□□□□ 0.37
SS18-216ENST00000580751 DPF3Q92784 378 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 DYDC2Q96IM9 177 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 AK8Q96MA6 479 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 HSD17B14Q9BPX1 270 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 TUFT1Q9NNX1 390 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 NRBP2Q9NSY0 501 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 SRPRBQ9Y5M8 271 aaKnown RBP17.37■□□□□ 0.37
SS18-216ENST00000580751 COL1A2P08123 1366 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 PDE4DIPQ5VU43 2346 aa17.37■□□□□ 0.37
SS18-216ENST00000580751 RRN3P2A6NIE6 340 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 ZNF862O60290 1169 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 B4GALT4O60513 344 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 CUTAO60888 179 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 CLTBP09497 229 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 ATP4AP20648 1035 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 LONP1P36776 959 aaKnown RBP17.36■□□□□ 0.37
SS18-216ENST00000580751 ME1P48163 572 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 GRIK4Q16099 956 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 PTGISQ16647 500 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 KLHL40Q2TBA0 621 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 ZNF484Q5JVG2 852 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 KRT79Q5XKE5 535 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 GDF6Q6KF10 455 aaPredicted RBP17.36■□□□□ 0.37
SS18-216ENST00000580751 C4orf19Q8IY42 314 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 PPP1R13LQ8WUF5 828 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 LMBR1Q8WVP7 490 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 CHAMP1Q96JM3 812 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 POLR3CQ9BUI4 534 aaPredicted RBP17.36■□□□□ 0.37
SS18-216ENST00000580751 GDPD2Q9HCC8 539 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 TRMT13Q9NUP7 481 aaKnown RBP17.36■□□□□ 0.37
SS18-216ENST00000580751 RGL1Q9NZL6 768 aa17.36■□□□□ 0.37
SS18-216ENST00000580751 SLITRK3O94933 977 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 LYPLA2O95372 231 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 CD4P01730 458 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 INSRRP14616 1297 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 MUTP22033 750 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 RPA1P27694 616 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 MARCKSP29966 332 aaPredicted RBP17.35■□□□□ 0.37
SS18-216ENST00000580751 CTTNQ14247 550 aaKnown RBP17.35■□□□□ 0.37
SS18-216ENST00000580751 TPH2Q8IWU9 490 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 C7orf61Q8IZ16 206 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 SNX29Q8TEQ0 813 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 ANP32EQ9BTT0 268 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 TRPV6Q9H1D0 765 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 SETD4Q9NVD3 440 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 SEPT9Q9UHD8 586 aaPredicted RBP17.35■□□□□ 0.37
SS18-216ENST00000580751 FBXO2Q9UK22 296 aaPredicted RBP17.35■□□□□ 0.37
SS18-216ENST00000580751 PCDHA7Q9UN72 937 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 NR2E3Q9Y5X4 410 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 KAT6AQ92794 2004 aa17.35■□□□□ 0.37
SS18-216ENST00000580751 CMA1P23946 247 aa17.34■□□□□ 0.37
SS18-216ENST00000580751 CCT6AP40227 531 aaKnown RBP17.34■□□□□ 0.37
SS18-216ENST00000580751 MLLT1Q03111 559 aaPredicted RBP17.34■□□□□ 0.37
SS18-216ENST00000580751 FAAP100Q0VG06 881 aa17.34■□□□□ 0.37
SS18-216ENST00000580751 TRMT1LQ7Z2T5 733 aaKnown RBP17.34■□□□□ 0.37
SS18-216ENST00000580751 CATSPER3Q86XQ3 398 aa17.34■□□□□ 0.37
SS18-216ENST00000580751 PRKAG2Q9UGJ0 569 aa17.34■□□□□ 0.37
SS18-216ENST00000580751 TUBE1Q9UJT0 475 aa17.34■□□□□ 0.37
SS18-216ENST00000580751 KDM3AQ9Y4C1 1321 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 FAM237AA0A1B0GTK4 181 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 MBLAC1A4D2B0 266 aaPredicted RBP17.33■□□□□ 0.36
SS18-216ENST00000580751 SLC26A4O43511 780 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 TRAK2O60296 914 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 MED24O75448 989 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 SPATA31C1P0DKV0 1188 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 YWHABP31946 246 aaKnown RBP17.33■□□□□ 0.36
SS18-216ENST00000580751 IGBP1P78318 339 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 ADAM17P78536 824 aa17.33■□□□□ 0.36
SS18-216ENST00000580751 PTK7Q13308 1070 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms