RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 PABPC4Q13310 644 aaKnown RBP eCLIP17.1■□□□□ 0.33
NUP88-207ENST00000573584 PRR5LQ6MZQ0 368 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 CATSPER3Q86XQ3 398 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 SUGP1Q8IWZ8 645 aaKnown RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 SLFN12Q8IYM2 578 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 METTL13Q8N6R0 699 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 ZNF473Q8WTR7 871 aaKnown RBP17.1■□□□□ 0.33
NUP88-207ENST00000573584 LRRC45Q96CN5 670 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 CCT8L2Q96SF2 557 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.1■□□□□ 0.336e-6■■□□□ 11.7
NUP88-207ENST00000573584 PCDHA1Q9Y5I3 950 aa17.1■□□□□ 0.33
NUP88-207ENST00000573584 ATXN2Q99700 1313 aaKnown RBP17.09■□□□□ 0.33
NUP88-207ENST00000573584 C6orf229H3BNL8 230 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 MEIS1O00470 390 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 RAD21O60216 631 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 TCERG1LQ5VWI1 586 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 LRIG3Q6UXM1 1119 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 MICALCLQ6ZW33 695 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 PLCD3Q8N3E9 789 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 TPCN2Q8NHX9 752 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 TBC1D16Q8TBP0 767 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 CALR3Q96L12 384 aaKnown RBP17.09■□□□□ 0.33
NUP88-207ENST00000573584 ANO3Q9BYT9 981 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 DDX47Q9H0S4 455 aaKnown RBP17.09■□□□□ 0.33
NUP88-207ENST00000573584 NHSQ6T4R5 1651 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 SLC26A4O43511 780 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 PEX26Q7Z412 305 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 NLRP14Q86W24 1093 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 SFR1Q86XK3 245 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 OR2W6PQ8NHA6 318 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 GLT8D2Q9H1C3 349 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 DNM3Q9UQ16 869 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 NOC2LQ9Y3T9 749 aaKnown RBP17.09■□□□□ 0.33
NUP88-207ENST00000573584 CAPN7Q9Y6W3 813 aa17.09■□□□□ 0.33
NUP88-207ENST00000573584 MYH7BA7E2Y1 1941 aa17.08■□□□□ 0.33
NUP88-207ENST00000573584 KRIT1O00522 736 aa17.08■□□□□ 0.33
NUP88-207ENST00000573584 CALUO43852 315 aaPredicted RBP17.08■□□□□ 0.33
NUP88-207ENST00000573584 AKAP3O75969 853 aa17.08■□□□□ 0.33
NUP88-207ENST00000573584 SHMT1P34896 483 aa17.08■□□□□ 0.33
NUP88-207ENST00000573584 CTNNA1P35221 906 aaKnown RBP17.08■□□□□ 0.33
NUP88-207ENST00000573584 HOXD13P35453 343 aa17.08■□□□□ 0.33
NUP88-207ENST00000573584 VPS36Q86VN1 386 aa17.08■□□□□ 0.33
NUP88-207ENST00000573584 MYCBPAPQ8TBZ2 947 aa17.08■□□□□ 0.33
NUP88-207ENST00000573584 REEP2Q9BRK0 252 aa17.08■□□□□ 0.33
NUP88-207ENST00000573584 CYP3A7-CYP3A51PA0A087WV96 503 aa17.08■□□□□ 0.32
NUP88-207ENST00000573584 CYP3A7P24462 503 aa17.08■□□□□ 0.32
NUP88-207ENST00000573584 HNRNPH1P31943 449 aaKnown RBP17.08■□□□□ 0.32
NUP88-207ENST00000573584 PRKCIP41743 596 aa17.08■□□□□ 0.32
NUP88-207ENST00000573584 UAP1Q16222 522 aaPredicted RBP17.08■□□□□ 0.32
NUP88-207ENST00000573584 QRICH1Q2TAL8 776 aa17.08■□□□□ 0.32
NUP88-207ENST00000573584 ARFGAP2Q8N6H7 521 aa17.08■□□□□ 0.32
NUP88-207ENST00000573584 LMBR1Q8WVP7 490 aa17.08■□□□□ 0.32
NUP88-207ENST00000573584 E7EVH7 732 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 H0YGN5 161 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 PDXKO00764 312 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 H2AFZP0C0S5 128 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 EPHA7Q15375 998 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 PRR16Q569H4 304 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 H2AFVQ71UI9 128 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 NFS1Q9Y697 457 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 GUCY2CP25092 1073 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 KCTD19Q17RG1 926 aaPredicted RBP17.07■□□□□ 0.32
NUP88-207ENST00000573584 EPM2AIP1Q7L775 607 aaPredicted RBP17.07■□□□□ 0.32
NUP88-207ENST00000573584 ERMNQ8TAM6 284 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 RBM17Q96I25 401 aaKnown RBP17.07■□□□□ 0.32
NUP88-207ENST00000573584 PAGR1Q9BTK6 254 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 NEUROG2Q9H2A3 272 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 PPANQ9NQ55 473 aaKnown RBP17.07■□□□□ 0.32
NUP88-207ENST00000573584 AMACRQ9UHK6 382 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 H0YHG0 523 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 CCDC188H7C350 402 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 FAM107AO95990 144 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 ZBTB48P10074 688 aaPredicted RBP17.07■□□□□ 0.32
NUP88-207ENST00000573584 ITGA4P13612 1032 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 DAAM2Q86T65 1068 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 SYT2Q8N9I0 419 aaPredicted RBP17.07■□□□□ 0.32
NUP88-207ENST00000573584 USP40Q9NVE5 1235 aa17.07■□□□□ 0.32
NUP88-207ENST00000573584 NR3C1P04150 777 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 RPL13P26373 211 aaKnown RBP17.06■□□□□ 0.32
NUP88-207ENST00000573584 HDLBPQ00341 1268 aaKnown RBP17.06■□□□□ 0.32
NUP88-207ENST00000573584 PPARDQ03181 441 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 SPIRE1Q08AE8 756 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 ZNF844Q08AG5 666 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 CRY2Q49AN0 593 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 MBOAT7Q96N66 472 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 METTL14Q9HCE5 456 aaKnown RBP17.06■□□□□ 0.32
NUP88-207ENST00000573584 BCCIPQ9P287 314 aaKnown RBP eCLIP17.06■□□□□ 0.32
NUP88-207ENST00000573584 AJAP1Q9UKB5 411 aaPredicted RBP17.06■□□□□ 0.32
NUP88-207ENST00000573584 BBOX1O75936 387 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 SPATA31C1P0DKV0 1188 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 ANXA13P27216 316 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 RPA1P27694 616 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 CASP4P49662 377 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 ARHGAP4P98171 946 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 GJB7Q6PEY0 223 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 RUFY4Q6ZNE9 571 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 YTHDF3Q7Z739 585 aaKnown RBP17.06■□□□□ 0.32
NUP88-207ENST00000573584 SLFN11Q7Z7L1 901 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 ETNPPLQ8TBG4 499 aa17.06■□□□□ 0.32
NUP88-207ENST00000573584 CERKQ8TCT0 537 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms