RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 BDP1A6H8Y1 2624 aa20.62■□□□□ 0.89
CHD3-214ENST00000572579 IPO5O00410 1097 aaKnown RBP20.61■□□□□ 0.89
CHD3-214ENST00000572579 IFNAR1P17181 557 aa20.61■□□□□ 0.89
CHD3-214ENST00000572579 SWSAP1Q6NVH7 229 aa20.61■□□□□ 0.89
CHD3-214ENST00000572579 MTHFD1LQ6UB35 978 aa20.61■□□□□ 0.89
CHD3-214ENST00000572579 TMEM192Q8IY95 271 aa20.61■□□□□ 0.89
CHD3-214ENST00000572579 HLA-CQ95604 372 aa20.61■□□□□ 0.89
CHD3-214ENST00000572579 SLC26A6Q9BXS9 759 aa20.61■□□□□ 0.89
CHD3-214ENST00000572579 TMX1Q9H3N1 280 aa20.61■□□□□ 0.89
CHD3-214ENST00000572579 VPS54Q9P1Q0 977 aa20.61■□□□□ 0.89
CHD3-214ENST00000572579 COG5Q9UP83 839 aa20.61■□□□□ 0.89
CHD3-214ENST00000572579 BRWD1Q9NSI6 2320 aa20.61■□□□□ 0.89
CHD3-214ENST00000572579 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.6■□□□□ 0.89
CHD3-214ENST00000572579 REC8O95072 547 aa20.6■□□□□ 0.89
CHD3-214ENST00000572579 KLRC1P26715 233 aa20.6■□□□□ 0.89
CHD3-214ENST00000572579 CIITAP33076 1130 aa20.6■□□□□ 0.89
CHD3-214ENST00000572579 TSHZ1Q6ZSZ6 1077 aa20.6■□□□□ 0.89
CHD3-214ENST00000572579 RUFY3Q7L099 469 aa20.6■□□□□ 0.89
CHD3-214ENST00000572579 RSPH3Q86UC2 560 aa20.6■□□□□ 0.89
CHD3-214ENST00000572579 KIAA0319LQ8IZA0 1049 aa20.6■□□□□ 0.89
CHD3-214ENST00000572579 REXO1Q8N1G1 1221 aaKnown RBP20.6■□□□□ 0.89
CHD3-214ENST00000572579 ATP8B4Q8TF62 1192 aa20.6■□□□□ 0.89
CHD3-214ENST00000572579 ZNF689Q96CS4 500 aaPredicted RBP20.6■□□□□ 0.89
CHD3-214ENST00000572579 IL17RAQ96F46 866 aa20.6■□□□□ 0.89
CHD3-214ENST00000572579 C6orf50Q9HD87 102 aa20.6■□□□□ 0.89
CHD3-214ENST00000572579 COL4A4P53420 1690 aaPredicted RBP20.59■□□□□ 0.89
CHD3-214ENST00000572579 SMIM35A0A1B0GVV1 85 aa20.59■□□□□ 0.89
CHD3-214ENST00000572579 H3BNC9 293 aa20.59■□□□□ 0.89
CHD3-214ENST00000572579 PSMA5P28066 241 aa20.59■□□□□ 0.89
CHD3-214ENST00000572579 RNF26Q9BY78 433 aaPredicted RBP20.59■□□□□ 0.89
CHD3-214ENST00000572579 CELF4Q9BZC1 486 aaKnown RBP20.59■□□□□ 0.89
CHD3-214ENST00000572579 PADI3Q9ULW8 664 aa20.59■□□□□ 0.89
CHD3-214ENST00000572579 IGSF9BQ9UPX0 1349 aa20.58■□□□□ 0.89
CHD3-214ENST00000572579 BACH1O14867 736 aa20.58■□□□□ 0.89
CHD3-214ENST00000572579 NPY5RQ15761 445 aa20.58■□□□□ 0.89
CHD3-214ENST00000572579 PRR16Q569H4 304 aa20.58■□□□□ 0.89
CHD3-214ENST00000572579 IER5Q5VY09 327 aa20.58■□□□□ 0.89
CHD3-214ENST00000572579 TMEM40Q8WWA1 233 aa20.58■□□□□ 0.89
CHD3-214ENST00000572579 GJA10Q969M2 543 aa20.58■□□□□ 0.89
CHD3-214ENST00000572579 AIFM3Q96NN9 605 aa20.58■□□□□ 0.89
CHD3-214ENST00000572579 ZNF577Q9BSK1 485 aa20.58■□□□□ 0.89
CHD3-214ENST00000572579 UPF3BQ9BZI7 483 aaKnown RBP20.58■□□□□ 0.89
CHD3-214ENST00000572579 ZNF302Q9NR11 478 aa20.58■□□□□ 0.89
CHD3-214ENST00000572579 MAFBQ9Y5Q3 323 aaPredicted RBP20.58■□□□□ 0.89
CHD3-214ENST00000572579 TRPV2Q9Y5S1 764 aa20.58■□□□□ 0.89
CHD3-214ENST00000572579 COL4A6Q14031 1691 aa20.58■□□□□ 0.88
CHD3-214ENST00000572579 SIP14410 1827 aa20.57■□□□□ 0.88
CHD3-214ENST00000572579 HBP1O60381 514 aa20.57■□□□□ 0.88
CHD3-214ENST00000572579 DTNBO60941 627 aa20.57■□□□□ 0.88
CHD3-214ENST00000572579 DGKIO75912 1065 aa20.57■□□□□ 0.88
CHD3-214ENST00000572579 GNA11P29992 359 aa20.57■□□□□ 0.88
CHD3-214ENST00000572579 SLC26A2P50443 739 aa20.57■□□□□ 0.88
CHD3-214ENST00000572579 GPM6BQ13491 265 aa20.57■□□□□ 0.88
CHD3-214ENST00000572579 TMEM266Q2M3C6 531 aa20.57■□□□□ 0.88
CHD3-214ENST00000572579 PDXDC2PQ6P474 469 aa20.57■□□□□ 0.88
CHD3-214ENST00000572579 MRPL38Q96DV4 380 aaKnown RBP20.57■□□□□ 0.88
CHD3-214ENST00000572579 SQORQ9Y6N5 450 aa20.57■□□□□ 0.88
CHD3-214ENST00000572579 TCF20Q9UGU0 1960 aaKnown RBP20.57■□□□□ 0.88
CHD3-214ENST00000572579 KDM3AQ9Y4C1 1321 aa20.56■□□□□ 0.88
CHD3-214ENST00000572579 M0R2N6 131 aa20.56■□□□□ 0.88
CHD3-214ENST00000572579 MSH4O15457 936 aa20.56■□□□□ 0.88
CHD3-214ENST00000572579 MGEA5O60502 916 aa20.56■□□□□ 0.88
CHD3-214ENST00000572579 BMPR1AP36894 532 aa20.56■□□□□ 0.88
CHD3-214ENST00000572579 AAK1Q2M2I8 961 aa20.56■□□□□ 0.88
CHD3-214ENST00000572579 ZNF746Q6NUN9 644 aaPredicted RBP20.56■□□□□ 0.88
CHD3-214ENST00000572579 MIS18BP1Q6P0N0 1132 aa20.56■□□□□ 0.88
CHD3-214ENST00000572579 CLP1Q92989 425 aaKnown RBP20.56■□□□□ 0.88
CHD3-214ENST00000572579 CD320Q9NPF0 282 aa20.56■□□□□ 0.88
CHD3-214ENST00000572579 MYO7AQ13402 2215 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 C5orf67F2Z3F1 127 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 GRM6O15303 877 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 EPB41L2O43491 1005 aaKnown RBP20.55■□□□□ 0.88
CHD3-214ENST00000572579 ZNF862O60290 1169 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 C22orf31O95567 290 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 GATMP50440 423 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 KRT76Q01546 638 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 CAMK1Q14012 370 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 TRMT1LQ7Z2T5 733 aaKnown RBP20.55■□□□□ 0.88
CHD3-214ENST00000572579 NME8Q8N427 588 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 FIBCD1Q8N539 461 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.55■□□□□ 0.88
CHD3-214ENST00000572579 CCDC12Q8WUD4 166 aaPredicted RBP20.55■□□□□ 0.88
CHD3-214ENST00000572579 SAMD11Q96NU1 681 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 TM6SF1Q9BZW5 370 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 UBE2ZQ9H832 354 aaPredicted RBP20.55■□□□□ 0.88
CHD3-214ENST00000572579 ERVK-5Q9HDB9 667 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 TBC1D22BQ9NU19 505 aa20.55■□□□□ 0.88
CHD3-214ENST00000572579 NOC2LQ9Y3T9 749 aaKnown RBP20.55■□□□□ 0.88
CHD3-214ENST00000572579 AKAP17AQ02040 695 aaKnown RBP20.54■□□□□ 0.88
CHD3-214ENST00000572579 TCEAL5Q5H9L2 206 aa20.54■□□□□ 0.88
CHD3-214ENST00000572579 ZNF484Q5JVG2 852 aa20.54■□□□□ 0.88
CHD3-214ENST00000572579 FAM160B1Q5W0V3 765 aa20.54■□□□□ 0.88
CHD3-214ENST00000572579 MCTP2Q6DN12 878 aa20.54■□□□□ 0.88
CHD3-214ENST00000572579 IL27Q8NEV9 243 aa20.54■□□□□ 0.88
CHD3-214ENST00000572579 KHSRPQ92945 711 aaKnown RBP eCLIP20.54■□□□□ 0.88
CHD3-214ENST00000572579 ZNF274Q96GC6 653 aaPredicted RBP20.54■□□□□ 0.88
CHD3-214ENST00000572579 GABBR1Q9UBS5 961 aa20.54■□□□□ 0.88
CHD3-214ENST00000572579 PCDHA10Q9Y5I2 948 aa20.54■□□□□ 0.88
CHD3-214ENST00000572579 CYP46A1Q9Y6A2 500 aa20.54■□□□□ 0.88
CHD3-214ENST00000572579 TTC3P53804 2025 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms