RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 DCTPP1Q9H773 170 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 NGRNQ9NPE2 291 aaKnown RBP12.79□□□□□ -0.36
VPS53-207ENST00000570510 ERAP1Q9NZ08 941 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 DBR1Q9UK59 544 aaKnown RBP12.79□□□□□ -0.36
VPS53-207ENST00000570510 PADI3Q9ULW8 664 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 SQORQ9Y6N5 450 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 SPATA31C2B4DYI2 1134 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 ZNF213O14771 459 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 ZBTB5O15062 677 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 TCF7P36402 384 aaPredicted RBP12.78□□□□□ -0.36
VPS53-207ENST00000570510 TMEM62Q0P6H9 643 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 APOBRQ0VD83 1088 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 RTN4RL1Q86UN2 441 aaPredicted RBP12.78□□□□□ -0.36
VPS53-207ENST00000570510 NLRX1Q86UT6 975 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 PI4K2BQ8TCG2 481 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 RASGRP4Q8TDF6 673 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 LINC01599Q8WXQ3 324 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 EVI5LQ96CN4 794 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 CNTNAP3BQ96NU0 1288 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 CNTNAP3Q9BZ76 1288 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 ADAM7Q9H2U9 754 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 SMOC2Q9H3U7 446 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 POMKQ9H5K3 350 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 VPS13AQ96RL7 3174 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 TTC3P53804 2025 aa12.78□□□□□ -0.36
VPS53-207ENST00000570510 CACNA1BQ00975 2339 aa12.77□□□□□ -0.36
VPS53-207ENST00000570510 RRN3P2A6NIE6 340 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 SPDYE4A6NLX3 237 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 KLRF2D3W0D1 207 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 OPLAHO14841 1288 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 LAG3P18627 525 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 AOC1P19801 751 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 MX1P20591 662 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 SARSP49591 514 aaKnown RBP12.77□□□□□ -0.37
VPS53-207ENST00000570510 ATAT1Q5SQI0 421 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 ZC3H14Q6PJT7 736 aaKnown RBP12.77□□□□□ -0.37
VPS53-207ENST00000570510 CCDC105Q8IYK2 499 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 DTWD2Q8NBA8 298 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 COLGALT1Q8NBJ5 622 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 CYP2W1Q8TAV3 490 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 MRPS27Q92552 414 aaKnown RBP12.77□□□□□ -0.37
VPS53-207ENST00000570510 INPP4AQ96PE3 977 aaPredicted RBP12.77□□□□□ -0.37
VPS53-207ENST00000570510 ZSCAN10Q96SZ4 725 aaPredicted RBP12.77□□□□□ -0.37
VPS53-207ENST00000570510 UBAC1Q9BSL1 405 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 TYW1Q9NV66 732 aaKnown RBP12.77□□□□□ -0.37
VPS53-207ENST00000570510 GINS2Q9Y248 185 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 LZTS1Q9Y250 596 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 TRPV2Q9Y5S1 764 aa12.77□□□□□ -0.37
VPS53-207ENST00000570510 GVINP1Q7Z2Y8 2422 aa12.76□□□□□ -0.37
VPS53-207ENST00000570510 NT5C2P49902 561 aa12.76□□□□□ -0.37
VPS53-207ENST00000570510 MFAP1P55081 439 aaKnown RBP12.76□□□□□ -0.37
VPS53-207ENST00000570510 GHRHRQ02643 423 aa12.76□□□□□ -0.37
VPS53-207ENST00000570510 ODR4Q5SWX8 454 aa12.76□□□□□ -0.37
VPS53-207ENST00000570510 TBC1D10CQ8IV04 446 aa12.76□□□□□ -0.37
VPS53-207ENST00000570510 CRIPAKQ8N1N5 446 aa12.76□□□□□ -0.37
VPS53-207ENST00000570510 SEPT1Q8WYJ6 367 aa12.76□□□□□ -0.37
VPS53-207ENST00000570510 CUL5Q93034 780 aa12.76□□□□□ -0.37
VPS53-207ENST00000570510 ACSF2Q96CM8 615 aaPredicted RBP12.76□□□□□ -0.37
VPS53-207ENST00000570510 SENP7Q9BQF6 1050 aa12.76□□□□□ -0.37
VPS53-207ENST00000570510 SMARCAD1Q9H4L7 1026 aa12.76□□□□□ -0.37
VPS53-207ENST00000570510 MBLAC1A4D2B0 266 aaPredicted RBP12.75□□□□□ -0.37
VPS53-207ENST00000570510 HIDE1A8MVS5 230 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 FSCN2O14926 492 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 ZMYM6O95789 1325 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 PPM1AP35813 382 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 NEDD4P46934 1319 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 MRPS9P82933 396 aaKnown RBP12.75□□□□□ -0.37
VPS53-207ENST00000570510 TMEM266Q2M3C6 531 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 RARS2Q5T160 578 aaKnown RBP12.75□□□□□ -0.37
VPS53-207ENST00000570510 IFIT1BQ5T764 474 aaKnown RBP12.75□□□□□ -0.37
VPS53-207ENST00000570510 FAM102BQ5T8I3 360 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 ZDHHC14Q8IZN3 488 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 SIX5Q8N196 739 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 SMARCC2Q8TAQ2 1214 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 CDHR1Q96JP9 859 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 FAM227BQ96M60 508 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 ADAM2Q99965 735 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 CELF4Q9BZC1 486 aaKnown RBP12.75□□□□□ -0.37
VPS53-207ENST00000570510 AZI2Q9H6S1 392 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 ATP6V0A4Q9HBG4 840 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 CYP26B1Q9NR63 512 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 C1orf112Q9NSG2 853 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 CDH22Q9UJ99 828 aa12.75□□□□□ -0.37
VPS53-207ENST00000570510 KAT6AQ92794 2004 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 IGSF9BQ9UPX0 1349 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 PI15O43692 258 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 RPS6KA5O75582 802 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 WEE2P0C1S8 567 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 INSRRP14616 1297 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 KRT76Q01546 638 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 PLCB3Q01970 1234 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 KCNC3Q14003 757 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 SMC1AQ14683 1233 aaKnown RBP12.74□□□□□ -0.37
VPS53-207ENST00000570510 SLC24A5Q71RS6 500 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 ABI1Q8IZP0 508 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 STAG2Q8N3U4 1231 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 ENAHQ8N8S7 591 aaPredicted RBP12.74□□□□□ -0.37
VPS53-207ENST00000570510 OTUD7AQ8TE49 926 aaPredicted RBP12.74□□□□□ -0.37
VPS53-207ENST00000570510 RUBCNQ92622 972 aa12.74□□□□□ -0.37
VPS53-207ENST00000570510 ZNF558Q96NG5 402 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms