RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 VPS53Q5VIR6 699 aa20.96■□□□□ 0.95
CLK3-227ENST00000570296 IER5Q5VY09 327 aa20.96■□□□□ 0.95
CLK3-227ENST00000570296 ZC3H14Q6PJT7 736 aaKnown RBP20.96■□□□□ 0.95
CLK3-227ENST00000570296 DGKHQ86XP1 1220 aa20.96■□□□□ 0.95
CLK3-227ENST00000570296 MRPS27Q92552 414 aaKnown RBP20.96■□□□□ 0.95
CLK3-227ENST00000570296 TCF25Q9BQ70 676 aa20.96■□□□□ 0.95
CLK3-227ENST00000570296 AMNQ9BXJ7 453 aa20.96■□□□□ 0.95
CLK3-227ENST00000570296 ENTPD7Q9NQZ7 604 aa20.96■□□□□ 0.95
CLK3-227ENST00000570296 RNF216Q9NWF9 866 aaPredicted RBP20.96■□□□□ 0.95
CLK3-227ENST00000570296 PADI3Q9ULW8 664 aa20.96■□□□□ 0.95
CLK3-227ENST00000570296 HIDE1A8MVS5 230 aa20.95■□□□□ 0.94
CLK3-227ENST00000570296 DHX16O60231 1041 aaKnown RBP20.95■□□□□ 0.94
CLK3-227ENST00000570296 STAM2O75886 525 aa20.95■□□□□ 0.94
CLK3-227ENST00000570296 PCP11498 1178 aaKnown RBP20.95■□□□□ 0.94
CLK3-227ENST00000570296 SDHBP21912 280 aa20.95■□□□□ 0.94
CLK3-227ENST00000570296 SARSP49591 514 aaKnown RBP20.95■□□□□ 0.94
CLK3-227ENST00000570296 PLCB3Q01970 1234 aa20.95■□□□□ 0.94
CLK3-227ENST00000570296 JMJD4Q9H9V9 463 aa20.95■□□□□ 0.94
CLK3-227ENST00000570296 PKD1L2Q7Z442 2459 aa20.95■□□□□ 0.94
CLK3-227ENST00000570296 DENND4AQ7Z401 1863 aa20.94■□□□□ 0.94
CLK3-227ENST00000570296 SPATA31C2B4DYI2 1134 aa20.94■□□□□ 0.94
CLK3-227ENST00000570296 LAG3P18627 525 aa20.94■□□□□ 0.94
CLK3-227ENST00000570296 HOXA13P31271 388 aaPredicted RBP20.94■□□□□ 0.94
CLK3-227ENST00000570296 APOBRQ0VD83 1088 aa20.94■□□□□ 0.94
CLK3-227ENST00000570296 PAK2Q13177 524 aa20.94■□□□□ 0.94
CLK3-227ENST00000570296 GRIK4Q16099 956 aa20.94■□□□□ 0.94
CLK3-227ENST00000570296 PNMA1Q8ND90 353 aa20.94■□□□□ 0.94
CLK3-227ENST00000570296 ZFP91Q96JP5 570 aaPredicted RBP20.94■□□□□ 0.94
CLK3-227ENST00000570296 INPP4AQ96PE3 977 aaPredicted RBP20.94■□□□□ 0.94
CLK3-227ENST00000570296 CHMP4BQ9H444 224 aaKnown RBP20.94■□□□□ 0.94
CLK3-227ENST00000570296 ERVK-5Q9HDB9 667 aa20.94■□□□□ 0.94
CLK3-227ENST00000570296 CYP26B1Q9NR63 512 aa20.94■□□□□ 0.94
CLK3-227ENST00000570296 PCDHB7Q9Y5E2 793 aa20.94■□□□□ 0.94
CLK3-227ENST00000570296 TBKBP1A7MCY6 615 aa20.93■□□□□ 0.94
CLK3-227ENST00000570296 ARP10275 920 aa20.93■□□□□ 0.94
CLK3-227ENST00000570296 KIAA1841Q6NSI8 718 aa20.93■□□□□ 0.94
CLK3-227ENST00000570296 TYW1Q9NV66 732 aaKnown RBP20.93■□□□□ 0.94
CLK3-227ENST00000570296 FBXL21Q9UKT6 434 aa20.93■□□□□ 0.94
CLK3-227ENST00000570296 PCDHA1Q9Y5I3 950 aa20.93■□□□□ 0.94
CLK3-227ENST00000570296 TRPV2Q9Y5S1 764 aa20.93■□□□□ 0.94
CLK3-227ENST00000570296 HCFC2Q9Y5Z7 792 aa20.93■□□□□ 0.94
CLK3-227ENST00000570296 TTC41PQ6P2S7 1318 aa20.93■□□□□ 0.94
CLK3-227ENST00000570296 IGSF9BQ9UPX0 1349 aa20.93■□□□□ 0.94
CLK3-227ENST00000570296 M0QZ92 97 aa20.92■□□□□ 0.94
CLK3-227ENST00000570296 FIBPO43427 364 aa20.92■□□□□ 0.94
CLK3-227ENST00000570296 SEMA3FQ13275 785 aa20.92■□□□□ 0.94
CLK3-227ENST00000570296 TDGQ13569 410 aa20.92■□□□□ 0.94
CLK3-227ENST00000570296 MARCH8Q5T0T0 291 aa20.92■□□□□ 0.94
CLK3-227ENST00000570296 SIX5Q8N196 739 aa20.92■□□□□ 0.94
CLK3-227ENST00000570296 VAT1LQ9HCJ6 419 aa20.92■□□□□ 0.94
CLK3-227ENST00000570296 DBR1Q9UK59 544 aaKnown RBP20.92■□□□□ 0.94
CLK3-227ENST00000570296 DUSP12Q9UNI6 340 aa20.92■□□□□ 0.94
CLK3-227ENST00000570296 ZMYM6O95789 1325 aa20.91■□□□□ 0.94
CLK3-227ENST00000570296 EOMESO95936 686 aa20.91■□□□□ 0.94
CLK3-227ENST00000570296 FGAP02671 866 aa20.91■□□□□ 0.94
CLK3-227ENST00000570296 ATAT1Q5SQI0 421 aa20.91■□□□□ 0.94
CLK3-227ENST00000570296 KIAA0319Q5VV43 1072 aa20.91■□□□□ 0.94
CLK3-227ENST00000570296 MFSD6Q6ZSS7 791 aa20.91■□□□□ 0.94
CLK3-227ENST00000570296 MIER1Q8N108 512 aa20.91■□□□□ 0.94
CLK3-227ENST00000570296 DCLK2Q8N568 766 aa20.91■□□□□ 0.94
CLK3-227ENST00000570296 SENP7Q9BQF6 1050 aa20.91■□□□□ 0.94
CLK3-227ENST00000570296 TMX1Q9H3N1 280 aa20.91■□□□□ 0.94
CLK3-227ENST00000570296 CWH43Q9H720 699 aa20.91■□□□□ 0.94
CLK3-227ENST00000570296 ERAP1Q9NZ08 941 aa20.91■□□□□ 0.94
CLK3-227ENST00000570296 FRMPD4Q14CM0 1322 aa20.9■□□□□ 0.94
CLK3-227ENST00000570296 GCOM1H8Y6P7 765 aaPredicted RBP20.9■□□□□ 0.94
CLK3-227ENST00000570296 POLR2MP0CAP2 368 aa20.9■□□□□ 0.94
CLK3-227ENST00000570296 MRPS9P82933 396 aaKnown RBP20.9■□□□□ 0.94
CLK3-227ENST00000570296 CCDC178Q5BJE1 867 aa20.9■□□□□ 0.94
CLK3-227ENST00000570296 FAM49AQ9H0Q0 323 aaPredicted RBP20.9■□□□□ 0.94
CLK3-227ENST00000570296 KAT14Q9H8E8 782 aa20.9■□□□□ 0.94
CLK3-227ENST00000570296 DZANK1Q9NVP4 752 aa20.9■□□□□ 0.94
CLK3-227ENST00000570296 HCSTQ9UBK5 93 aa20.9■□□□□ 0.94
CLK3-227ENST00000570296 TELO2Q9Y4R8 837 aa20.9■□□□□ 0.94
CLK3-227ENST00000570296 ANKRD11Q6UB99 2663 aaPredicted RBP20.9■□□□□ 0.94
CLK3-227ENST00000570296 PARP1P09874 1014 aaKnown RBP20.89■□□□□ 0.93
CLK3-227ENST00000570296 WEE2P0C1S8 567 aa20.89■□□□□ 0.93
CLK3-227ENST00000570296 PPM1AP35813 382 aa20.89■□□□□ 0.93
CLK3-227ENST00000570296 NT5C2P49902 561 aa20.89■□□□□ 0.93
CLK3-227ENST00000570296 SP4Q02446 784 aa20.89■□□□□ 0.93
CLK3-227ENST00000570296 TMC7Q7Z402 723 aa20.89■□□□□ 0.93
CLK3-227ENST00000570296 PI4K2BQ8TCG2 481 aa20.89■□□□□ 0.93
CLK3-227ENST00000570296 ESR2Q92731 530 aa20.89■□□□□ 0.93
CLK3-227ENST00000570296 ACSF2Q96CM8 615 aaPredicted RBP20.89■□□□□ 0.93
CLK3-227ENST00000570296 C1orf112Q9NSG2 853 aa20.89■□□□□ 0.93
CLK3-227ENST00000570296 CACNA1IQ9P0X4 2223 aa20.89■□□□□ 0.93
CLK3-227ENST00000570296 KDM3AQ9Y4C1 1321 aa20.88■□□□□ 0.93
CLK3-227ENST00000570296 RRN3P2A6NIE6 340 aa20.88■□□□□ 0.93
CLK3-227ENST00000570296 PPP1R11O60927 126 aaPredicted RBP20.88■□□□□ 0.93
CLK3-227ENST00000570296 TCF7P36402 384 aaPredicted RBP20.88■□□□□ 0.93
CLK3-227ENST00000570296 KRT17Q04695 432 aa20.88■□□□□ 0.93
CLK3-227ENST00000570296 SMC1AQ14683 1233 aaKnown RBP20.88■□□□□ 0.93
CLK3-227ENST00000570296 RARS2Q5T160 578 aaKnown RBP20.88■□□□□ 0.93
CLK3-227ENST00000570296 FAM102BQ5T8I3 360 aa20.88■□□□□ 0.93
CLK3-227ENST00000570296 FCHSD1Q86WN1 690 aa20.88■□□□□ 0.93
CLK3-227ENST00000570296 MRPL43Q8N983 215 aaKnown RBP20.88■□□□□ 0.93
CLK3-227ENST00000570296 GIMAP8Q8ND71 665 aaPredicted RBP20.88■□□□□ 0.93
CLK3-227ENST00000570296 RIN2Q8WYP3 895 aaPredicted RBP20.88■□□□□ 0.93
CLK3-227ENST00000570296 ZKSCAN3Q9BRR0 538 aa20.88■□□□□ 0.93
CLK3-227ENST00000570296 CELF4Q9BZC1 486 aaKnown RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms