RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TET1Q8NFU7 2136 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 KPNA6O60684 536 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 P4HBP07237 508 aaKnown RBP10.43□□□□□ -0.74
VPS35-211ENST00000569950 PRKCEQ02156 737 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 STK38Q15208 465 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 E2F4Q16254 413 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 LRRC26Q2I0M4 334 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 KIAA0753Q2KHM9 967 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 C1orf53Q5VUE5 145 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 RESP18Q5W5W9 173 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 POTEGQ6S5H5 508 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 C4orf19Q8IY42 314 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 LINC01465Q8N7H1 131 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 ATP8B4Q8TF62 1192 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 TRAPPC12Q8WVT3 735 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 SYMPKQ92797 1274 aaKnown RBP10.43□□□□□ -0.74
VPS35-211ENST00000569950 WNT8BQ93098 351 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 CCSER1Q9C0I3 900 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 GOLPH3LQ9H4A5 285 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 SMARCAD1Q9H4L7 1026 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 SPC25Q9HBM1 224 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 BLOC1S4Q9NUP1 217 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 HDAC6Q9UBN7 1215 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 CFAP45Q9UL16 551 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 HPSEQ9Y251 543 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 SCN5AQ14524 2016 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 MYH11P35749 1972 aa10.43□□□□□ -0.74
VPS35-211ENST00000569950 LAMA2P24043 3122 aaKnown RBP10.42□□□□□ -0.74
VPS35-211ENST00000569950 MBLAC1A4D2B0 266 aaPredicted RBP10.42□□□□□ -0.74
VPS35-211ENST00000569950 KBTBD13C9JR72 458 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 CUTAO60888 179 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 GADD45BO75293 160 aaPredicted RBP10.42□□□□□ -0.74
VPS35-211ENST00000569950 CABYRO75952 493 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 SMIM10L2AP0DMW4 78 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 SMIM10L2BP0DMW5 78 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 INSRRP14616 1297 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 CAPN2P17655 700 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 MARK3P27448 753 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 QARSP47897 775 aaKnown RBP10.42□□□□□ -0.74
VPS35-211ENST00000569950 PSMC5P62195 406 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 ZNF200P98182 395 aaPredicted RBP10.42□□□□□ -0.74
VPS35-211ENST00000569950 MKRN4PQ13434 485 aaPredicted RBP10.42□□□□□ -0.74
VPS35-211ENST00000569950 ITGA7Q13683 1181 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 KARSQ15046 597 aaKnown RBP10.42□□□□□ -0.74
VPS35-211ENST00000569950 GDF6Q6KF10 455 aaPredicted RBP10.42□□□□□ -0.74
VPS35-211ENST00000569950 PDXDC2PQ6P474 469 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 SLC39A5Q6ZMH5 540 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 KCNG4Q8TDN1 519 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 LMBR1Q8WVP7 490 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 DHX38Q92620 1227 aaKnown RBP10.42□□□□□ -0.74
VPS35-211ENST00000569950 SPATA32Q96LK8 384 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 AK8Q96MA6 479 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 SH2D3AQ9BRG2 576 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 NIFKQ9BYG3 293 aaKnown RBP10.42□□□□□ -0.74
VPS35-211ENST00000569950 SENP6Q9GZR1 1112 aaPredicted RBP10.42□□□□□ -0.74
VPS35-211ENST00000569950 SCAND2PQ9GZW5 306 aaPredicted RBP10.42□□□□□ -0.74
VPS35-211ENST00000569950 TUFT1Q9NNX1 390 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 PDLIM7Q9NR12 457 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 ERAP1Q9NZ08 941 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 PCDH10Q9P2E7 1040 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 ATP6V1DQ9Y5K8 247 aa10.42□□□□□ -0.74
VPS35-211ENST00000569950 IGKV6-21A0A0C4DH24 114 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 CCDC85CA6NKD9 419 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 ARVCFO00192 962 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 BACH1O14867 736 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 CD4P01730 458 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 OATP04181 439 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 SLC26A2P50443 739 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 NPEPPSP55786 919 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 TMEM266Q2M3C6 531 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 TRIM71Q2Q1W2 868 aaKnown RBP10.41□□□□□ -0.74
VPS35-211ENST00000569950 PLA2G4FQ68DD2 849 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 ADALQ6DHV7 355 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 NFRKBQ6P4R8 1299 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 TRAF7Q6Q0C0 670 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 FAM126BQ8IXS8 530 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 NEK9Q8TD19 979 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 SNX29Q8TEQ0 813 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 PIGOQ8TEQ8 1089 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 GLG1Q92896 1179 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 MTRQ99707 1265 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 C11orf49Q9H6J7 331 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 ZSWIM4Q9H7M6 989 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 XPNPEP1Q9NQW7 623 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 STARD7Q9NQZ5 370 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 TRMT13Q9NUP7 481 aaKnown RBP10.41□□□□□ -0.74
VPS35-211ENST00000569950 SETD4Q9NVD3 440 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 GTF2IRD1Q9UHL9 959 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 SAMM50Q9Y512 469 aa10.41□□□□□ -0.74
VPS35-211ENST00000569950 A0A0U1RQG5 324 aaPredicted RBP10.4□□□□□ -0.74
VPS35-211ENST00000569950 A0A1W2PQ27 194 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 A0A1W2PQ64 194 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 A0A1W2PQD8 194 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 E9PMD0 336 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 ZEB2O60315 1214 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 MARCH6O60337 910 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 B4GALT4O60513 344 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 C22orf31O95567 290 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 PLCG1P19174 1290 aa10.4□□□□□ -0.74
VPS35-211ENST00000569950 NCLP19338 710 aaKnown RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms