RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 A0A1W2PQ64 194 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 A0A1W2PQD8 194 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 VARSP26640 1264 aaKnown RBP11.77□□□□□ -0.53
CLK3-226ENST00000569406 MYL5Q02045 173 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 PDE4BQ07343 736 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 TRIM29Q14134 588 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 CYP26C1Q6V0L0 522 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 SYNCQ9H7C4 482 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 TIMM22Q9Y584 194 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 IGF2BP3O00425 579 aaKnown RBP eCLIP11.77□□□□□ -0.53
CLK3-226ENST00000569406 SLC26A4O43511 780 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 NLRP12P59046 1061 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 GSTM4Q03013 218 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 LRP8Q14114 963 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 PARP10Q53GL7 1025 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 FAM117BQ6P1L5 589 aa11.77□□□□□ -0.53
CLK3-226ENST00000569406 SMIM23A6NLE4 172 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 MAGEB3O15480 346 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 LIFRP42702 1097 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 SEPT2Q15019 361 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 SF3B3Q15393 1217 aaKnown RBP11.76□□□□□ -0.53
CLK3-226ENST00000569406 EZH2Q15910 746 aaKnown RBP11.76□□□□□ -0.53
CLK3-226ENST00000569406 MUM1Q2TAK8 710 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 OR52E8Q6IFG1 317 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 FAM47EQ6ZV65 393 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 ARFGAP2Q8N6H7 521 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 CCDC197Q8NCU1 140 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 KLHL29Q96CT2 875 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 HPSEQ9Y251 543 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 TDRKHQ9Y2W6 561 aaKnown RBP11.76□□□□□ -0.53
CLK3-226ENST00000569406 SAR1BQ9Y6B6 198 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 TOB1P50616 345 aaPredicted RBP11.76□□□□□ -0.53
CLK3-226ENST00000569406 PMS2P54278 862 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 PIAS4Q8N2W9 510 aaPredicted RBP11.76□□□□□ -0.53
CLK3-226ENST00000569406 FAM133AQ8N9E0 248 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 MAGEA13PA6NCF6 341 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 AKR1B15C9JRZ8 316 aaPredicted RBP11.76□□□□□ -0.53
CLK3-226ENST00000569406 PDGFRBP09619 1106 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 HSPA8P11142 646 aaKnown RBP11.76□□□□□ -0.53
CLK3-226ENST00000569406 SLC5A1P13866 664 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 ATP6V1C1P21283 382 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 PAK2Q13177 524 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 MAP7Q14244 749 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 CCSAPQ6IQ19 270 aaPredicted RBP11.76□□□□□ -0.53
CLK3-226ENST00000569406 PPFIBP1Q86W92 1011 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 MLKLQ8NB16 471 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 MRPS27Q92552 414 aaKnown RBP11.76□□□□□ -0.53
CLK3-226ENST00000569406 SNX27Q96L92 541 aa11.76□□□□□ -0.53
CLK3-226ENST00000569406 FAM237AA0A1B0GTK4 181 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 YEATS4O95619 227 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 GSTT2P0CG29 244 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 GSTT2BP0CG30 244 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 KCNA3P22001 575 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 TM4SF1P30408 202 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 CACNA2D1P54289 1103 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 DHX9Q08211 1270 aaKnown RBP11.75□□□□□ -0.53
CLK3-226ENST00000569406 SEC23AQ15436 765 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 CNPY1Q3B7I2 92 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 EMC10Q5UCC4 262 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 TBC1D9BQ66K14 1250 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 SHC4Q6S5L8 630 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 RNF10Q8N5U6 811 aaKnown RBP11.75□□□□□ -0.53
CLK3-226ENST00000569406 KCTD17Q8N5Z5 321 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 CELF1Q92879 486 aaKnown RBP11.75□□□□□ -0.53
CLK3-226ENST00000569406 ADAM22Q9P0K1 906 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 CDK5RAP2Q96SN8 1893 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 A0A0J9YVX5 310 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 H0Y3Z8 333 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 HGSO14964 777 aaPredicted RBP11.75□□□□□ -0.53
CLK3-226ENST00000569406 ENDOUP21128 410 aaKnown RBP11.75□□□□□ -0.53
CLK3-226ENST00000569406 GBP1P32455 592 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 GYG1P46976 350 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 CKAP4Q07065 602 aaKnown RBP11.75□□□□□ -0.53
CLK3-226ENST00000569406 PTK7Q13308 1070 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 BYSLQ13895 437 aaKnown RBP11.75□□□□□ -0.53
CLK3-226ENST00000569406 PPP4R3AQ6IN85 833 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 CLEC4GQ6UXB4 293 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 VPS37DQ86XT2 251 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 CYP4X1Q8N118 509 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 RPGRIP1Q96KN7 1286 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 ATP6V1G3Q96LB4 118 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 PANX2Q96RD6 677 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 DMGDHQ9UI17 866 aaKnown RBP11.75□□□□□ -0.53
CLK3-226ENST00000569406 CARD8Q9Y2G2 431 aa11.75□□□□□ -0.53
CLK3-226ENST00000569406 POTEFA5A3E0 1075 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 TRAPPC3O43617 180 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 TACC1O75410 805 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 FUT2Q10981 343 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 RCN2Q14257 317 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 INAQ16352 499 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 CCDC152Q4G0S7 254 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 KRT40Q6A162 431 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 PDCD7Q8N8D1 485 aaKnown RBP11.74□□□□□ -0.53
CLK3-226ENST00000569406 TMEM87BQ96K49 555 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 MINPP1Q9UNW1 487 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 MAST2Q6P0Q8 1798 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 ZNF233A6NK53 670 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 TRIM64CA6NLI5 447 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 ZNF185O15231 689 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 ACTN4O43707 911 aaKnown RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms