RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ATP2C1P98194 919 aaPredicted RBP21.98■■□□□ 1.11
CLN3-225ENST00000566824 MDM2Q00987 491 aaPredicted RBP21.98■■□□□ 1.11
CLN3-225ENST00000566824 CYP4A11Q02928 519 aa21.98■■□□□ 1.11
CLN3-225ENST00000566824 CTTNQ14247 550 aaKnown RBP21.98■■□□□ 1.11
CLN3-225ENST00000566824 SERINC5Q86VE9 423 aa21.98■■□□□ 1.11
CLN3-225ENST00000566824 EIF2AK1Q9BQI3 630 aaKnown RBP21.98■■□□□ 1.11
CLN3-225ENST00000566824 SH2D3AQ9BRG2 576 aa21.98■■□□□ 1.11
CLN3-225ENST00000566824 WNT8AQ9H1J5 351 aa21.98■■□□□ 1.11
CLN3-225ENST00000566824 HIPK3Q9H422 1215 aa21.98■■□□□ 1.11
CLN3-225ENST00000566824 NOD1Q9Y239 953 aa21.98■■□□□ 1.11
CLN3-225ENST00000566824 NRCAMQ92823 1304 aa21.97■■□□□ 1.11
CLN3-225ENST00000566824 ZBTB39O15060 712 aa21.97■■□□□ 1.11
CLN3-225ENST00000566824 TIMP1P01033 207 aa21.97■■□□□ 1.11
CLN3-225ENST00000566824 OATP04181 439 aa21.97■■□□□ 1.11
CLN3-225ENST00000566824 RAG1P15918 1043 aa21.97■■□□□ 1.11
CLN3-225ENST00000566824 MAGEA10P43363 369 aaPredicted RBP21.97■■□□□ 1.11
CLN3-225ENST00000566824 SLC26A2P50443 739 aa21.97■■□□□ 1.11
CLN3-225ENST00000566824 SF3A1Q15459 793 aaKnown RBP21.97■■□□□ 1.11
CLN3-225ENST00000566824 TANC1Q9C0D5 1861 aa21.97■■□□□ 1.11
CLN3-225ENST00000566824 A0A087WWV3 80 aa21.96■■□□□ 1.11
CLN3-225ENST00000566824 PP2D1A8MPX8 630 aa21.96■■□□□ 1.11
CLN3-225ENST00000566824 HBP1O60381 514 aa21.96■■□□□ 1.11
CLN3-225ENST00000566824 SLITRK3O94933 977 aa21.96■■□□□ 1.11
CLN3-225ENST00000566824 CCL23P55773 120 aa21.96■■□□□ 1.11
CLN3-225ENST00000566824 PTK7Q13308 1070 aa21.96■■□□□ 1.11
CLN3-225ENST00000566824 HSD17B14Q9BPX1 270 aa21.96■■□□□ 1.11
CLN3-225ENST00000566824 PRKAG2Q9UGJ0 569 aa21.96■■□□□ 1.11
CLN3-225ENST00000566824 ARID2Q68CP9 1835 aa21.96■■□□□ 1.11
CLN3-225ENST00000566824 SIP14410 1827 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 MBLAC1A4D2B0 266 aaPredicted RBP21.95■■□□□ 1.1
CLN3-225ENST00000566824 F13A1P00488 732 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 SPATA31C1P0DKV0 1188 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 QARSP47897 775 aaKnown RBP21.95■■□□□ 1.1
CLN3-225ENST00000566824 FXR2P51116 673 aaKnown RBP eCLIP21.95■■□□□ 1.1
CLN3-225ENST00000566824 EPHB4P54760 987 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 PSMC5P62195 406 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 CEBPZQ03701 1054 aaKnown RBP21.95■■□□□ 1.1
CLN3-225ENST00000566824 PTPAQ15257 358 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 FOXD4L6Q3SYB3 417 aaPredicted RBP21.95■■□□□ 1.1
CLN3-225ENST00000566824 TRAF7Q6Q0C0 670 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 FOXD4L3Q6VB84 417 aaPredicted RBP21.95■■□□□ 1.1
CLN3-225ENST00000566824 ZNF579Q8NAF0 562 aaKnown RBP21.95■■□□□ 1.1
CLN3-225ENST00000566824 BBXQ8WY36 941 aaPredicted RBP21.95■■□□□ 1.1
CLN3-225ENST00000566824 VWCEQ96DN2 955 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 SCLYQ96I15 445 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 CHAMP1Q96JM3 812 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 USP28Q96RU2 1077 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 LXNQ9BS40 222 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 ZSCAN16Q9H4T2 348 aaPredicted RBP21.95■■□□□ 1.1
CLN3-225ENST00000566824 TUBE1Q9UJT0 475 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 TET1Q8NFU7 2136 aa21.95■■□□□ 1.1
CLN3-225ENST00000566824 MED24O75448 989 aa21.94■■□□□ 1.1
CLN3-225ENST00000566824 P4HBP07237 508 aaKnown RBP21.94■■□□□ 1.1
CLN3-225ENST00000566824 CDC25AP30304 524 aa21.94■■□□□ 1.1
CLN3-225ENST00000566824 PRPHP41219 470 aa21.94■■□□□ 1.1
CLN3-225ENST00000566824 GRIN1Q05586 938 aa21.94■■□□□ 1.1
CLN3-225ENST00000566824 PLA2G4FQ68DD2 849 aa21.94■■□□□ 1.1
CLN3-225ENST00000566824 ANO5Q75V66 913 aa21.94■■□□□ 1.1
CLN3-225ENST00000566824 TPH2Q8IWU9 490 aa21.94■■□□□ 1.1
CLN3-225ENST00000566824 IGSF22Q8N9C0 903 aa21.94■■□□□ 1.1
CLN3-225ENST00000566824 CEP89Q96ST8 783 aa21.94■■□□□ 1.1
CLN3-225ENST00000566824 OSBPL7Q9BZF2 842 aa21.94■■□□□ 1.1
CLN3-225ENST00000566824 LOXHD1Q8IVV2 1947 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 RRN3P2A6NIE6 340 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 DDX11L8A8MPP1 907 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 GNAT1P11488 350 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 CKBP12277 381 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 KLRC1P26715 233 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 GPNMBQ14956 572 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 TARBP2Q15633 366 aaKnown RBP21.93■■□□□ 1.1
CLN3-225ENST00000566824 ECM1Q16610 540 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 XKR3Q5GH77 459 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 ZNF484Q5JVG2 852 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 MFSD5Q6N075 450 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 MTHFD1LQ6UB35 978 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 GDF15Q99988 308 aa21.93■■□□□ 1.1
CLN3-225ENST00000566824 TFIP11Q9UBB9 837 aaKnown RBP21.93■■□□□ 1.1
CLN3-225ENST00000566824 SEPT9Q9UHD8 586 aaPredicted RBP21.93■■□□□ 1.1
CLN3-225ENST00000566824 COL1A2P08123 1366 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 LAD1O00515 517 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 C22orf31O95567 290 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 BRD1O95696 1058 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 CSF2RAP15509 400 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 DDIT3P35638 169 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 NPEPPSP55786 919 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 RBL2Q08999 1139 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 ZNF618Q5T7W0 954 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 DTHD1Q6ZMT9 781 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 CATSPER3Q86XQ3 398 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 FAM167AQ96KS9 214 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 NIFKQ9BYG3 293 aaKnown RBP21.92■■□□□ 1.1
CLN3-225ENST00000566824 NRBP2Q9NSY0 501 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 DAXXQ9UER7 740 aaPredicted RBP21.92■■□□□ 1.1
CLN3-225ENST00000566824 LRWD1Q9UFC0 647 aa21.92■■□□□ 1.1
CLN3-225ENST00000566824 VWA3AA6NCI4 1184 aa21.91■■□□□ 1.1
CLN3-225ENST00000566824 THPOP40225 353 aa21.91■■□□□ 1.1
CLN3-225ENST00000566824 MBTPS1Q14703 1052 aa21.91■■□□□ 1.1
CLN3-225ENST00000566824 TMEM266Q2M3C6 531 aa21.91■■□□□ 1.1
CLN3-225ENST00000566824 MTERF2Q49AM1 385 aa21.91■■□□□ 1.1
CLN3-225ENST00000566824 PRPF38BQ5VTL8 546 aaKnown RBP21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms