RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 ZBED3Q96IU2 234 aaPredicted RBP6.87□□□□□ -1.31
CLN3-223ENST00000566472 NACC1Q96RE7 527 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 OSBPL9Q96SU4 736 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 MMS19Q96T76 1030 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 RIT2Q99578 217 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 RHOXF2Q9BQY4 288 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 WDR18Q9BV38 432 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 RUSC1Q9BVN2 902 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 BHMT2Q9H2M3 363 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 ZHX3Q9H4I2 956 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 ABCB6Q9NP58 842 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 MED4Q9NPJ6 270 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 TBC1D7Q9P0N9 293 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 INTUQ9ULD6 942 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 PCDHGC5Q9Y5F6 944 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 CAPN6Q9Y6Q1 641 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 MYH7BA7E2Y1 1941 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 KIF13BQ9NQT8 1826 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 SHTN1A0MZ66 631 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 CCDC66A2RUB6 948 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 EML1O00423 815 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 MEIS1O00470 390 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 ENC1O14682 589 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 WDR46O15213 610 aaKnown RBP6.86□□□□□ -1.31
CLN3-223ENST00000566472 C21orf2O43822 256 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 TLR2O60603 784 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 GAS7O60861 476 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 PRPF6O94906 941 aaKnown RBP6.86□□□□□ -1.31
CLN3-223ENST00000566472 LYPLA2O95372 231 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 GCNT3O95395 438 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 MOCS3O95396 460 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 ASNSP08243 561 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 FDX1P10109 184 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 MYBP10242 640 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 RFX1P22670 979 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 HOXA13P31271 388 aaPredicted RBP6.86□□□□□ -1.31
CLN3-223ENST00000566472 CYP2C19P33261 490 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 PSMC2P35998 433 aaKnown RBP6.86□□□□□ -1.31
CLN3-223ENST00000566472 ECE1P42892 770 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 PAFAH1B1P43034 410 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 PTGER2P43116 358 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 AARSP49588 968 aaKnown RBP eCLIP6.86□□□□□ -1.31
CLN3-223ENST00000566472 HSD17B4P51659 736 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 CASP5P51878 434 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 SNAP25P60880 206 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 SNRPFP62306 86 aaKnown RBP6.86□□□□□ -1.31
CLN3-223ENST00000566472 PSMC6P62333 389 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 CACNB1Q02641 598 aaPredicted RBP6.86□□□□□ -1.31
CLN3-223ENST00000566472 RAPGEF1Q13905 1077 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 CASP8Q14790 479 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 TNIP1Q15025 636 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 PPP2R5AQ15172 486 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 EXOC3L4Q17RC7 722 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 KLHDC7AQ5VTJ3 777 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 TAF3Q5VWG9 929 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 DPY19L2P1Q6NXN4 242 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 C1orf186Q6ZWK4 172 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 HS2ST1Q7LGA3 356 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 VPS36Q86VN1 386 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 MCF2L2Q86YR7 1114 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 CREG2Q8IUH2 290 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 SLC9A9Q8IVB4 645 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 NIM1KQ8IY84 436 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 LARGE2Q8N3Y3 721 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 FAM71BQ8TC56 605 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 ACER1Q8TDN7 264 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 SLC16A10Q8TF71 515 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 LPAR1Q92633 364 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 EXOC4Q96A65 974 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 DYDC2Q96IM9 177 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 CAMKK2Q96RR4 588 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 MXRA8Q9BRK3 442 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 TIPINQ9BVW5 301 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 MAF1Q9H063 256 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 MLXIPQ9HAP2 919 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 PARVGQ9HBI0 331 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 NLRC4Q9NPP4 1024 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 JADE2Q9NQC1 790 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 ZNF219Q9P2Y4 722 aaPredicted RBP6.86□□□□□ -1.31
CLN3-223ENST00000566472 HDAC6Q9UBN7 1215 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 ZNRF3Q9ULT6 936 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 NENFQ9UMX5 172 aa6.86□□□□□ -1.31
CLN3-223ENST00000566472 ATAD5Q96QE3 1844 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 ZMYM2Q9UBW7 1377 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 A0A0A6YYK5 440 aaPredicted RBP6.85□□□□□ -1.31
CLN3-223ENST00000566472 CLRN2A0PK11 232 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 TGFB1I1O43294 461 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 N4BP1O75113 896 aaKnown RBP6.85□□□□□ -1.31
CLN3-223ENST00000566472 FLOT1O75955 427 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 SLITRK3O94933 977 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 CFBP00751 764 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 ICAM1P05362 532 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 CCDC172P0C7W6 258 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 UCHL3P15374 230 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 FERP16591 822 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 PON1P27169 355 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 HOXD13P35453 343 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 JAM2P57087 298 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 RASSF7Q02833 373 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 GFPT1Q06210 699 aaPredicted RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms