RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 TLL1O43897 1013 aa20.82■□□□□ 0.92
CLN3-214ENST00000565140 EFCAB14O75071 495 aa20.82■□□□□ 0.92
CLN3-214ENST00000565140 TDP2O95551 362 aa20.82■□□□□ 0.92
CLN3-214ENST00000565140 CYP3A7P24462 503 aa20.82■□□□□ 0.92
CLN3-214ENST00000565140 KRT76Q01546 638 aa20.82■□□□□ 0.92
CLN3-214ENST00000565140 SPRED2Q7Z698 418 aa20.82■□□□□ 0.92
CLN3-214ENST00000565140 SEPT8Q92599 483 aa20.82■□□□□ 0.92
CLN3-214ENST00000565140 SLC5A5Q92911 643 aa20.82■□□□□ 0.92
CLN3-214ENST00000565140 TNPO1Q92973 898 aaKnown RBP20.82■□□□□ 0.92
CLN3-214ENST00000565140 C22orf23Q9BZE7 217 aa20.82■□□□□ 0.92
CLN3-214ENST00000565140 FAM49AQ9H0Q0 323 aaPredicted RBP20.82■□□□□ 0.92
CLN3-214ENST00000565140 CERS4Q9HA82 394 aa20.82■□□□□ 0.92
CLN3-214ENST00000565140 PCDHA2Q9Y5H9 948 aa20.82■□□□□ 0.92
CLN3-214ENST00000565140 MAFBQ9Y5Q3 323 aaPredicted RBP20.82■□□□□ 0.92
CLN3-214ENST00000565140 CUL9Q8IWT3 2517 aa20.82■□□□□ 0.92
CLN3-214ENST00000565140 PRRC2BQ5JSZ5 2229 aaKnown RBP20.81■□□□□ 0.92
CLN3-214ENST00000565140 ZBTB42B2RXF5 422 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 HBP1O60381 514 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 GJB5O95377 273 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 TAP1Q03518 808 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 INF2Q27J81 1249 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 Q4G0T1 1027 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 FAM117BQ6P1L5 589 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 MTHFD1LQ6UB35 978 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 RSPH3Q86UC2 560 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 SMAP1Q8IYB5 467 aaPredicted RBP20.81■□□□□ 0.92
CLN3-214ENST00000565140 OXER1Q8TDS5 423 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 ATP8B4Q8TF62 1192 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 ZBED2Q9BTP6 218 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 PCDHA10Q9Y5I2 948 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 CDY2AQ9Y6F7 541 aa20.81■□□□□ 0.92
CLN3-214ENST00000565140 PSAPP07602 524 aa20.8■□□□□ 0.92
CLN3-214ENST00000565140 GHRP10912 638 aa20.8■□□□□ 0.92
CLN3-214ENST00000565140 MRPS6P82932 125 aaKnown RBP20.8■□□□□ 0.92
CLN3-214ENST00000565140 TMEM62Q0P6H9 643 aa20.8■□□□□ 0.92
CLN3-214ENST00000565140 ST3GAL1Q11201 340 aa20.8■□□□□ 0.92
CLN3-214ENST00000565140 LPIN1Q14693 890 aa20.8■□□□□ 0.92
CLN3-214ENST00000565140 NONOQ15233 471 aaKnown RBP eCLIP20.8■□□□□ 0.92
CLN3-214ENST00000565140 KRT25Q7Z3Z0 450 aa20.8■□□□□ 0.92
CLN3-214ENST00000565140 NSUN7Q8NE18 718 aaKnown RBP20.8■□□□□ 0.92
CLN3-214ENST00000565140 MBOAT7Q96N66 472 aa20.8■□□□□ 0.92
CLN3-214ENST00000565140 GAS2L1Q99501 681 aaPredicted RBP20.8■□□□□ 0.92
CLN3-214ENST00000565140 RIT2Q99578 217 aa20.8■□□□□ 0.92
CLN3-214ENST00000565140 IFIH1Q9BYX4 1025 aaKnown RBP20.8■□□□□ 0.92
CLN3-214ENST00000565140 GABBR1Q9UBS5 961 aa20.8■□□□□ 0.92
CLN3-214ENST00000565140 SAMM50Q9Y512 469 aa20.8■□□□□ 0.92
CLN3-214ENST00000565140 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.79■□□□□ 0.92
CLN3-214ENST00000565140 EPOPA6NHQ4 379 aa20.79■□□□□ 0.92
CLN3-214ENST00000565140 RFXAPO00287 272 aa20.79■□□□□ 0.92
CLN3-214ENST00000565140 GAS7O60861 476 aa20.79■□□□□ 0.92
CLN3-214ENST00000565140 XBP1P17861 261 aa20.79■□□□□ 0.92
CLN3-214ENST00000565140 KLRC1P26715 233 aa20.79■□□□□ 0.92
CLN3-214ENST00000565140 LRCH2Q5VUJ6 765 aa20.79■□□□□ 0.92
CLN3-214ENST00000565140 TRMT1LQ7Z2T5 733 aaKnown RBP20.79■□□□□ 0.92
CLN3-214ENST00000565140 MYOCDQ8IZQ8 938 aa20.79■□□□□ 0.92
CLN3-214ENST00000565140 USP38Q8NB14 1042 aa20.79■□□□□ 0.92
CLN3-214ENST00000565140 RAD9AQ99638 391 aa20.79■□□□□ 0.92
CLN3-214ENST00000565140 KIF2CQ99661 725 aa20.79■□□□□ 0.92
CLN3-214ENST00000565140 UNC45AQ9H3U1 944 aa20.79■□□□□ 0.92
CLN3-214ENST00000565140 COL1A2P08123 1366 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 SMIM35A0A1B0GVV1 85 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 WDR64B1ANS9 1081 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 JAK2O60674 1132 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 PSMD10O75832 226 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 AMHP03971 560 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 EARS2Q5JPH6 523 aaKnown RBP20.78■□□□□ 0.92
CLN3-214ENST00000565140 ZNF484Q5JVG2 852 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 FBXO47Q5MNV8 452 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 CKAP2LQ8IYA6 745 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 WASF1Q92558 559 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 TEKT3Q9BXF9 490 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 DISC1Q9NRI5 854 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 TCEAL9Q9UHQ7 104 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 TTC3P53804 2025 aa20.78■□□□□ 0.92
CLN3-214ENST00000565140 CCDC194A0A1B0GVG4 234 aa20.77■□□□□ 0.92
CLN3-214ENST00000565140 CHMP2AO43633 222 aa20.77■□□□□ 0.92
CLN3-214ENST00000565140 SLC37A4O43826 429 aa20.77■□□□□ 0.92
CLN3-214ENST00000565140 ZNF862O60290 1169 aa20.77■□□□□ 0.92
CLN3-214ENST00000565140 IGFBP4P22692 258 aa20.77■□□□□ 0.92
CLN3-214ENST00000565140 UGCGQ16739 394 aa20.77■□□□□ 0.92
CLN3-214ENST00000565140 IER5Q5VY09 327 aa20.77■□□□□ 0.92
CLN3-214ENST00000565140 MOXD1Q6UVY6 613 aa20.77■□□□□ 0.92
CLN3-214ENST00000565140 ETNPPLQ8TBG4 499 aa20.77■□□□□ 0.92
CLN3-214ENST00000565140 BBXQ8WY36 941 aaPredicted RBP20.77■□□□□ 0.92
CLN3-214ENST00000565140 ARNTL2Q8WYA1 636 aa20.77■□□□□ 0.92
CLN3-214ENST00000565140 APBB2Q92870 758 aa20.77■□□□□ 0.92
CLN3-214ENST00000565140 AGO3Q9H9G7 860 aaKnown RBP20.77■□□□□ 0.92
CLN3-214ENST00000565140 DDX25Q9UHL0 483 aaKnown RBP20.77■□□□□ 0.92
CLN3-214ENST00000565140 IGSF9BQ9UPX0 1349 aa20.77■□□□□ 0.91
CLN3-214ENST00000565140 FAM205CA6NFA0 338 aa20.76■□□□□ 0.91
CLN3-214ENST00000565140 LETM2Q2VYF4 491 aa20.76■□□□□ 0.91
CLN3-214ENST00000565140 B3GNT9Q6UX72 402 aa20.76■□□□□ 0.91
CLN3-214ENST00000565140 PIK3AP1Q6ZUJ8 805 aa20.76■□□□□ 0.91
CLN3-214ENST00000565140 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.76■□□□□ 0.91
CLN3-214ENST00000565140 KIAA0319LQ8IZA0 1049 aa20.76■□□□□ 0.91
CLN3-214ENST00000565140 PPM1EQ8WY54 764 aa20.76■□□□□ 0.91
CLN3-214ENST00000565140 TOP1MTQ969P6 601 aa20.76■□□□□ 0.91
CLN3-214ENST00000565140 CELF4Q9BZC1 486 aaKnown RBP20.76■□□□□ 0.91
CLN3-214ENST00000565140 LIMCH1Q9UPQ0 1083 aa20.76■□□□□ 0.91
CLN3-214ENST00000565140 TRPV2Q9Y5S1 764 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms