RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RSPH3Q86UC2 560 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.29□□□□□ -0.28
USP3-220ENST00000561381 IL17RAQ96F46 866 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 UIMC1Q96RL1 719 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 AGO4Q9HCK5 861 aaKnown RBP13.29□□□□□ -0.28
USP3-220ENST00000561381 CD320Q9NPF0 282 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 NLRC5Q86WI3 1866 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 COL4A6Q14031 1691 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 RRN3P2A6NIE6 340 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 DDX39AO00148 427 aaKnown RBP13.28□□□□□ -0.28
USP3-220ENST00000561381 MEIS1O00470 390 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 CD52P31358 61 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 CLK2P49760 499 aaKnown RBP13.28□□□□□ -0.28
USP3-220ENST00000561381 MRPS6P82932 125 aaKnown RBP13.28□□□□□ -0.28
USP3-220ENST00000561381 PTPROQ16827 1216 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 TCEAL5Q5H9L2 206 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 PPP1R18Q6NYC8 613 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 TSHZ1Q6ZSZ6 1077 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 BANK1Q8NDB2 785 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 LINC01599Q8WXQ3 324 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 SAMD11Q96NU1 681 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 SDF4Q9BRK5 362 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 AZI2Q9H6S1 392 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 BARHL2Q9NY43 387 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 NAP1L2Q9ULW6 460 aaPredicted RBP13.28□□□□□ -0.28
USP3-220ENST00000561381 NFASCO94856 1347 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 TTC3P53804 2025 aa13.28□□□□□ -0.28
USP3-220ENST00000561381 CDC45O75419 566 aa13.27□□□□□ -0.29
USP3-220ENST00000561381 CCNE2O96020 404 aa13.27□□□□□ -0.29
USP3-220ENST00000561381 FOSP01100 380 aaPredicted RBP13.27□□□□□ -0.29
USP3-220ENST00000561381 IL9P15248 144 aa13.27□□□□□ -0.29
USP3-220ENST00000561381 CTNNB1P35222 781 aa13.27□□□□□ -0.29
USP3-220ENST00000561381 ADD1P35611 737 aaKnown RBP13.27□□□□□ -0.29
USP3-220ENST00000561381 SREBF1P36956 1147 aa13.27□□□□□ -0.29
USP3-220ENST00000561381 STAT5BP51692 787 aa13.27□□□□□ -0.29
USP3-220ENST00000561381 LEXMQ3ZCV2 418 aa13.27□□□□□ -0.29
USP3-220ENST00000561381 JAKMIP3Q5VZ66 844 aa13.27□□□□□ -0.29
USP3-220ENST00000561381 PLPPR4Q7Z2D5 763 aa13.27□□□□□ -0.29
USP3-220ENST00000561381 RTN4RL1Q86UN2 441 aaPredicted RBP13.27□□□□□ -0.29
USP3-220ENST00000561381 FIBCD1Q8N539 461 aa13.27□□□□□ -0.29
USP3-220ENST00000561381 RC3H2Q9HBD1 1191 aaKnown RBP13.27□□□□□ -0.29
USP3-220ENST00000561381 BDP1A6H8Y1 2624 aa13.27□□□□□ -0.29
USP3-220ENST00000561381 ADGRA3Q8IWK6 1321 aa13.27□□□□□ -0.29
USP3-220ENST00000561381 POTEB3A0JP26 581 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 FAM86B1E9PN63 330 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 H3BQ06 376 aaPredicted RBP13.26□□□□□ -0.29
USP3-220ENST00000561381 hCG_1984214I3L0E3 225 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 GRM6O15303 877 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 CSPG5O95196 566 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 ATG7O95352 703 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 FAM86B2P0C5J1 330 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 ZNF76P36508 570 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 APOBRQ0VD83 1088 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 AP3B2Q13367 1082 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 KRT32Q14532 448 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 TIGD5Q53EQ6 642 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 IER5Q5VY09 327 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 POTEBQ6S5H4 581 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 LOXHD1Q8IVV2 1947 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 ZNF713Q8N859 430 aaPredicted RBP13.26□□□□□ -0.29
USP3-220ENST00000561381 ZNF689Q96CS4 500 aaPredicted RBP13.26□□□□□ -0.29
USP3-220ENST00000561381 C1QTNF1Q9BXJ1 281 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 PCDHA2Q9Y5H9 948 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 TRPV2Q9Y5S1 764 aa13.26□□□□□ -0.29
USP3-220ENST00000561381 ATG2AQ2TAZ0 1938 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 RALGAPA2Q2PPJ7 1873 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 IGKV6D-21A0A0A0MT36 114 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 C5orf67F2Z3F1 127 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 PPFIA3O75145 1194 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 DGKIO75912 1065 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 SCG2P13521 617 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 BMPR1AP36894 532 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 METAP2P50579 478 aaKnown RBP eCLIP13.25□□□□□ -0.29
USP3-220ENST00000561381 FGD1P98174 961 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 PFKFB3Q16875 520 aaPredicted RBP13.25□□□□□ -0.29
USP3-220ENST00000561381 PTCRAQ6ISU1 281 aaPredicted RBP13.25□□□□□ -0.29
USP3-220ENST00000561381 MTHFD1LQ6UB35 978 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 ABHD15Q6UXT9 468 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 EP400NLQ6ZTU2 488 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 Q6ZUG5 572 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 PLA2G4DQ86XP0 818 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 CCDC60Q8IWA6 550 aaPredicted RBP13.25□□□□□ -0.29
USP3-220ENST00000561381 CRYGNQ8WXF5 182 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 KCNB2Q92953 911 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 NSUN3Q9H649 340 aaKnown RBP13.25□□□□□ -0.29
USP3-220ENST00000561381 PADI3Q9ULW8 664 aa13.25□□□□□ -0.29
USP3-220ENST00000561381 IGSF9BQ9UPX0 1349 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 IGLV3-22A0A075B6J6 115 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 M0QZ92 97 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 BACH1O14867 736 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 DHX15O43143 795 aaKnown RBP13.24□□□□□ -0.29
USP3-220ENST00000561381 HMGB1P09429 215 aaKnown RBP13.24□□□□□ -0.29
USP3-220ENST00000561381 KLRC1P26715 233 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 RCAN1P53805 252 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 BTG3Q14201 252 aaPredicted RBP13.24□□□□□ -0.29
USP3-220ENST00000561381 PKN1Q16512 942 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 TMEM266Q2M3C6 531 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 NIPA1Q7RTP0 329 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 TEX2Q8IWB9 1127 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 FAM178BQ8IXR5 827 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms