RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 ZNF34Q8IZ26 560 aa7.54□□□□□ -1.2
LRRC28-220ENST00000561253 FLCNQ8NFG4 579 aa7.54□□□□□ -1.2
LRRC28-220ENST00000561253 EXOC2Q96KP1 924 aa7.54□□□□□ -1.2
LRRC28-220ENST00000561253 AP5S1Q9NUS5 200 aa7.54□□□□□ -1.2
LRRC28-220ENST00000561253 LMCD1Q9NZU5 365 aa7.54□□□□□ -1.2
LRRC28-220ENST00000561253 CCDC39Q9UFE4 941 aa7.54□□□□□ -1.2
LRRC28-220ENST00000561253 NRXN2Q9P2S2 1712 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 KIAA1324LA8MWY0 1029 aaPredicted RBP7.53□□□□□ -1.2
LRRC28-220ENST00000561253 SCG5P05408 212 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 MMP10P09238 476 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 SUMO1P63165 101 aaKnown RBP7.53□□□□□ -1.2
LRRC28-220ENST00000561253 ZP2Q05996 745 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 MAP4K2Q12851 820 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 RTP2Q5QGT7 225 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 EEF1DP3Q658K8 133 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 RCSD1Q6JBY9 416 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 ZNF574Q6ZN55 896 aaPredicted RBP7.53□□□□□ -1.2
LRRC28-220ENST00000561253 SPRED2Q7Z698 418 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 PLBD2Q8NHP8 589 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 OSBP2Q969R2 916 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 ISCA1Q9BUE6 129 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 CHMP4AQ9BY43 222 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 PCMTD2Q9NV79 361 aa7.53□□□□□ -1.2
LRRC28-220ENST00000561253 MRPS23Q9Y3D9 190 aaKnown RBP7.53□□□□□ -1.2
LRRC28-220ENST00000561253 IBTKQ9P2D0 1353 aaPredicted RBP7.53□□□□□ -1.2
LRRC28-220ENST00000561253 C10orf71Q711Q0 1435 aa7.52□□□□□ -1.2
LRRC28-220ENST00000561253 PI4KAP2A4QPH2 592 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 DLX3O60479 287 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 IGKV5-2P06315 115 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 AIMP1Q12904 312 aaKnown RBP7.52□□□□□ -1.21
LRRC28-220ENST00000561253 TCIRG1Q13488 830 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 TCEA2Q15560 299 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 PRSS53Q2L4Q9 553 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 KSR2Q6VAB6 950 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 C16orf86Q6ZW13 317 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 FAM177A1Q8N128 213 aaPredicted RBP7.52□□□□□ -1.21
LRRC28-220ENST00000561253 PI4KAP1Q8N8J0 262 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 NAT16Q8N8M0 369 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 TMEM145Q8NBT3 493 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 COPS5Q92905 334 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 KISS1RQ969F8 398 aaPredicted RBP7.52□□□□□ -1.21
LRRC28-220ENST00000561253 SPON1Q9HCB6 807 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 GPRC5CQ9NQ84 441 aa7.52□□□□□ -1.21
LRRC28-220ENST00000561253 CACNA1FO60840 1977 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 CARMIL3Q8ND23 1372 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 ABCC12Q96J65 1359 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 TMEM82A0PJX8 343 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 BCAR3O75815 825 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 NTSR2O95665 410 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 ASMTLO95671 621 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 THBDP07204 575 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 ZPBP2Q6X784 338 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 KIF6Q6ZMV9 814 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 NLRP10Q86W26 655 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 SYNPOQ8N3V7 929 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 STK31Q9BXU1 1019 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 SLAMF8Q9P0V8 285 aa7.51□□□□□ -1.21
LRRC28-220ENST00000561253 PXDNLA1KZ92 1463 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 DNAJC25-GNG10A0A024R161 153 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 KLRG2A4D1S0 409 aaPredicted RBP7.5□□□□□ -1.21
LRRC28-220ENST00000561253 FGF10O15520 208 aaPredicted RBP7.5□□□□□ -1.21
LRRC28-220ENST00000561253 TBC1D8O95759 1140 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 CYP4F3Q08477 520 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 ZMYM1Q5SVZ6 1142 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 BEND3Q5T5X7 828 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 SUSD4Q5VX71 490 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 EGFLAMQ63HQ2 1017 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 PRR5LQ6MZQ0 368 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 FCRL2Q96LA5 508 aaPredicted RBP7.5□□□□□ -1.21
LRRC28-220ENST00000561253 YTHDC1Q96MU7 727 aaKnown RBP7.5□□□□□ -1.21
LRRC28-220ENST00000561253 PTCHD1Q96NR3 888 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 ALPK1Q96QP1 1244 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 SMC4Q9NTJ3 1288 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 CLEC1BQ9P126 229 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 TNNQ9UQP3 1299 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 NIP7Q9Y221 180 aaKnown RBP eCLIP7.5□□□□□ -1.21
LRRC28-220ENST00000561253 MAP3K2Q9Y2U5 619 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 ARFGEF2Q9Y6D5 1785 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 RIC1Q4ADV7 1423 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 NUP98P52948 1817 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 PTPRCP08575 1304 aa7.5□□□□□ -1.21
LRRC28-220ENST00000561253 KIAA1551Q9HCM1 1747 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 TRBV23OR9-2A0A075B6M9 112 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 PPP1R12AO14974 1030 aaPredicted RBP7.49□□□□□ -1.21
LRRC28-220ENST00000561253 MEFVO15553 781 aaPredicted RBP7.49□□□□□ -1.21
LRRC28-220ENST00000561253 WNT11O96014 354 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 SERPINB2P05120 415 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 PLS3P13797 630 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 TRIM27P14373 513 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 PAMP19021 973 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 GPTP24298 496 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 DUSP4Q13115 394 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 PLEKHG4Q58EX7 1191 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 TAF7LQ5H9L4 462 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 SLC35F1Q5T1Q4 408 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 CYP2R1Q6VVX0 501 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 USP53Q70EK8 1073 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 WFDC3Q8IUB2 231 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 TP53INP2Q8IXH6 220 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 PPIL6Q8IXY8 311 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms