RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 MRPL38Q96DV4 380 aaKnown RBP18.45■□□□□ 0.54
SNX1-213ENST00000561026 SQORQ9Y6N5 450 aa18.45■□□□□ 0.54
SNX1-213ENST00000561026 COL4A6Q14031 1691 aa18.45■□□□□ 0.54
SNX1-213ENST00000561026 DDX39AO00148 427 aaKnown RBP18.44■□□□□ 0.54
SNX1-213ENST00000561026 IPO5O00410 1097 aaKnown RBP18.44■□□□□ 0.54
SNX1-213ENST00000561026 BACH1O14867 736 aa18.44■□□□□ 0.54
SNX1-213ENST00000561026 GNA11P29992 359 aa18.44■□□□□ 0.54
SNX1-213ENST00000561026 NTRK3Q16288 839 aa18.44■□□□□ 0.54
SNX1-213ENST00000561026 REXO1Q8N1G1 1221 aaKnown RBP18.44■□□□□ 0.54
SNX1-213ENST00000561026 PHKBQ93100 1093 aa18.44■□□□□ 0.54
SNX1-213ENST00000561026 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.43■□□□□ 0.54
SNX1-213ENST00000561026 SMIM35A0A1B0GVV1 85 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 M0QZ92 97 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 HBP1O60381 514 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 CD52P31358 61 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 EVCP57679 992 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 AKAP17AQ02040 695 aaKnown RBP18.43■□□□□ 0.54
SNX1-213ENST00000561026 TMEM62Q0P6H9 643 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 GPM6BQ13491 265 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 FAM160B1Q5W0V3 765 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 MTHFD1LQ6UB35 978 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 NME8Q8N427 588 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 FIBCD1Q8N539 461 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 ZNF577Q9BSK1 485 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 CELF4Q9BZC1 486 aaKnown RBP18.43■□□□□ 0.54
SNX1-213ENST00000561026 TRPV2Q9Y5S1 764 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 IGSF9BQ9UPX0 1349 aa18.43■□□□□ 0.54
SNX1-213ENST00000561026 KLRC1P26715 233 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 PDIA3P30101 505 aaKnown RBP18.42■□□□□ 0.54
SNX1-213ENST00000561026 SWSAP1Q6NVH7 229 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 MIS18BP1Q6P0N0 1132 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 RTN4RL1Q86UN2 441 aaPredicted RBP18.42■□□□□ 0.54
SNX1-213ENST00000561026 CCDC60Q8IWA6 550 aaPredicted RBP18.42■□□□□ 0.54
SNX1-213ENST00000561026 ATP8B4Q8TF62 1192 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 UIMC1Q96RL1 719 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 FTHL17Q9BXU8 183 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 RNF26Q9BY78 433 aaPredicted RBP18.42■□□□□ 0.54
SNX1-213ENST00000561026 UBE2ZQ9H832 354 aaPredicted RBP18.42■□□□□ 0.54
SNX1-213ENST00000561026 RC3H2Q9HBD1 1191 aaKnown RBP18.42■□□□□ 0.54
SNX1-213ENST00000561026 ZNF302Q9NR11 478 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 TBC1D22BQ9NU19 505 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 KDM3AQ9Y4C1 1321 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 C5orf67F2Z3F1 127 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 PPFIA3O75145 1194 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 DGKIO75912 1065 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 LINC00271P0C7V0 271 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 IFNAR1P17181 557 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 SETQ01105 290 aaPredicted RBP18.42■□□□□ 0.54
SNX1-213ENST00000561026 KRT76Q01546 638 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 PDXDC2PQ6P474 469 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 CRIPAKQ8N1N5 446 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 BICD2Q8TD16 824 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 LINC01599Q8WXQ3 324 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 ZNF689Q96CS4 500 aaPredicted RBP18.42■□□□□ 0.54
SNX1-213ENST00000561026 SLC26A6Q9BXS9 759 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 PADI3Q9ULW8 664 aa18.42■□□□□ 0.54
SNX1-213ENST00000561026 TTC3P53804 2025 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 ADGRA3Q8IWK6 1321 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 EPB41L2O43491 1005 aaKnown RBP18.41■□□□□ 0.54
SNX1-213ENST00000561026 RB1P06400 928 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 ATP4AP20648 1035 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 CIITAP33076 1130 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 CTNNB1P35222 781 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 BMPR1AP36894 532 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 CCT2P78371 535 aaKnown RBP18.41■□□□□ 0.54
SNX1-213ENST00000561026 TIGD5Q53EQ6 642 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 PRR16Q569H4 304 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 ZNF746Q6NUN9 644 aaPredicted RBP18.41■□□□□ 0.54
SNX1-213ENST00000561026 RUFY3Q7L099 469 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 KIAA0319LQ8IZA0 1049 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 BANK1Q8NDB2 785 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 RASGRP4Q8TDF6 673 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 CLP1Q92989 425 aaKnown RBP18.41■□□□□ 0.54
SNX1-213ENST00000561026 NCOA5Q9HCD5 579 aaKnown RBP18.41■□□□□ 0.54
SNX1-213ENST00000561026 ZSWIM6Q9HCJ5 1215 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 RWDD3Q9Y3V2 267 aa18.41■□□□□ 0.54
SNX1-213ENST00000561026 COL1A2P08123 1366 aa18.4■□□□□ 0.54
SNX1-213ENST00000561026 ZBTB42B2RXF5 422 aa18.4■□□□□ 0.54
SNX1-213ENST00000561026 KCNA5P22460 613 aa18.4■□□□□ 0.54
SNX1-213ENST00000561026 PAK2Q13177 524 aa18.4■□□□□ 0.54
SNX1-213ENST00000561026 BTG3Q14201 252 aaPredicted RBP18.4■□□□□ 0.54
SNX1-213ENST00000561026 LEXMQ3ZCV2 418 aa18.4■□□□□ 0.54
SNX1-213ENST00000561026 ZNF484Q5JVG2 852 aa18.4■□□□□ 0.54
SNX1-213ENST00000561026 SMAP1Q8IYB5 467 aaPredicted RBP18.4■□□□□ 0.54
SNX1-213ENST00000561026 CCDC148Q8NFR7 591 aa18.4■□□□□ 0.54
SNX1-213ENST00000561026 VPS54Q9P1Q0 977 aa18.4■□□□□ 0.54
SNX1-213ENST00000561026 MAFBQ9Y5Q3 323 aaPredicted RBP18.4■□□□□ 0.54
SNX1-213ENST00000561026 TOB2Q14106 344 aaPredicted RBP18.39■□□□□ 0.53
SNX1-213ENST00000561026 NPAS4Q8IUM7 802 aa18.39■□□□□ 0.53
SNX1-213ENST00000561026 BBXQ8WY36 941 aaPredicted RBP18.39■□□□□ 0.53
SNX1-213ENST00000561026 LENG9Q96B70 501 aa18.39■□□□□ 0.53
SNX1-213ENST00000561026 C11orf84Q9BUA3 381 aaPredicted RBP18.39■□□□□ 0.53
SNX1-213ENST00000561026 TMX1Q9H3N1 280 aa18.39■□□□□ 0.53
SNX1-213ENST00000561026 SH3GLB2Q9NR46 395 aa18.39■□□□□ 0.53
SNX1-213ENST00000561026 PCDHA10Q9Y5I2 948 aa18.39■□□□□ 0.53
SNX1-213ENST00000561026 EDIL3O43854 480 aa18.38■□□□□ 0.53
SNX1-213ENST00000561026 PSAPP07602 524 aa18.38■□□□□ 0.53
SNX1-213ENST00000561026 TMEM266Q2M3C6 531 aa18.38■□□□□ 0.53
SNX1-213ENST00000561026 TCEAL5Q5H9L2 206 aa18.38■□□□□ 0.53
SNX1-213ENST00000561026 FAM43BQ6ZT52 329 aaPredicted RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms