RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 SMAP1Q8IYB5 467 aaPredicted RBP14.27□□□□□ -0.13
SNX1-209ENST00000559961 KCNB2Q92953 911 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 PPP2R3CQ969Q6 453 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 RNF26Q9BY78 433 aaPredicted RBP14.27□□□□□ -0.13
SNX1-209ENST00000559961 CELF4Q9BZC1 486 aaKnown RBP14.27□□□□□ -0.13
SNX1-209ENST00000559961 ZMYND12Q9H0C1 365 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 CEP131Q9UPN4 1083 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 GINS2Q9Y248 185 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 MYO9BQ13459 2157 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 TRIP12Q14669 1992 aaPredicted RBP14.27□□□□□ -0.13
SNX1-209ENST00000559961 ATG7O95352 703 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 KLRC1P26715 233 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 TMOD1P28289 359 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 CD52P31358 61 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 CLK2P49760 499 aaKnown RBP14.26□□□□□ -0.13
SNX1-209ENST00000559961 TMEM62Q0P6H9 643 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 NFX1Q12986 1120 aaKnown RBP14.26□□□□□ -0.13
SNX1-209ENST00000559961 ITGB3BPQ13352 177 aaPredicted RBP14.26□□□□□ -0.13
SNX1-209ENST00000559961 PRR16Q569H4 304 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 MARCH8Q5T0T0 291 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 ZNF746Q6NUN9 644 aaPredicted RBP14.26□□□□□ -0.13
SNX1-209ENST00000559961 MTHFD1LQ6UB35 978 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 FBXL16Q8N461 479 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 BANK1Q8NDB2 785 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 ATP8B4Q8TF62 1192 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 C1QTNF1Q9BXJ1 281 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 NRBP2Q9NSY0 501 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 FAM217BQ9NTX9 383 aaPredicted RBP14.26□□□□□ -0.13
SNX1-209ENST00000559961 PCDHA10Q9Y5I2 948 aa14.26□□□□□ -0.13
SNX1-209ENST00000559961 UNC80Q8N2C7 3258 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 COL1A2P08123 1366 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 DENND3A2RUS2 1198 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 EIF5BO60841 1220 aaKnown RBP14.25□□□□□ -0.13
SNX1-209ENST00000559961 CCT2P78371 535 aaKnown RBP14.25□□□□□ -0.13
SNX1-209ENST00000559961 MGAT3Q09327 533 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 ABHD15Q6UXT9 468 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 RUFY3Q7L099 469 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 SPRED2Q7Z698 418 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 ZNF710Q8N1W2 664 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 METTL13Q8N6R0 699 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 BBXQ8WY36 941 aaPredicted RBP14.25□□□□□ -0.13
SNX1-209ENST00000559961 PHKBQ93100 1093 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 FAM167AQ96KS9 214 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 PCYT2Q99447 389 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 LMAN2LQ9H0V9 348 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 UBE2ZQ9H832 354 aaPredicted RBP14.25□□□□□ -0.13
SNX1-209ENST00000559961 SH3GLB2Q9NR46 395 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 PCDHB7Q9Y5E2 793 aa14.25□□□□□ -0.13
SNX1-209ENST00000559961 CDH23Q9H251 3354 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 ADGRA3Q8IWK6 1321 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 FAM86B1E9PN63 330 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 GPR182O15218 404 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 RPS6KA5O75582 802 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 FAM86B2P0C5J1 330 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 IFNAR1P17181 557 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 XBP1P17861 261 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 IBSPP21815 317 aaPredicted RBP14.24□□□□□ -0.13
SNX1-209ENST00000559961 KCNA5P22460 613 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 BMPR1AP36894 532 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 USP11P51784 963 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 MKRN4PQ13434 485 aaPredicted RBP14.24□□□□□ -0.13
SNX1-209ENST00000559961 SPOUT1Q5T280 376 aaKnown RBP14.24□□□□□ -0.13
SNX1-209ENST00000559961 TRMT1LQ7Z2T5 733 aaKnown RBP14.24□□□□□ -0.13
SNX1-209ENST00000559961 NPAS4Q8IUM7 802 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 TRAPPC12Q8WVT3 735 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 MAP7D2Q96T17 732 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 PLVAPQ9BX97 442 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 NSUN3Q9H649 340 aaKnown RBP14.24□□□□□ -0.13
SNX1-209ENST00000559961 PADI3Q9ULW8 664 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 CUL9Q8IWT3 2517 aa14.24□□□□□ -0.13
SNX1-209ENST00000559961 TET1Q8NFU7 2136 aa14.23□□□□□ -0.13
SNX1-209ENST00000559961 IGKV6D-21A0A0A0MT36 114 aa14.23□□□□□ -0.13
SNX1-209ENST00000559961 WDR64B1ANS9 1081 aa14.23□□□□□ -0.13
SNX1-209ENST00000559961 MAGEB2O15479 319 aa14.23□□□□□ -0.13
SNX1-209ENST00000559961 GAS7O60861 476 aa14.23□□□□□ -0.13
SNX1-209ENST00000559961 CDKL5O76039 1030 aa14.23□□□□□ -0.13
SNX1-209ENST00000559961 PDIA3P30101 505 aaKnown RBP14.23□□□□□ -0.13
SNX1-209ENST00000559961 NAALADL2Q58DX5 795 aa14.23□□□□□ -0.13
SNX1-209ENST00000559961 SCLT1Q96NL6 688 aa14.23□□□□□ -0.13
SNX1-209ENST00000559961 AAASQ9NRG9 546 aa14.23□□□□□ -0.13
SNX1-209ENST00000559961 GBF1Q92538 1859 aa14.23□□□□□ -0.13
SNX1-209ENST00000559961 IGSF9BQ9UPX0 1349 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 KDM3AQ9Y4C1 1321 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 MARCH6O60337 910 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 DEXIO95424 95 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 CCNE2O96020 404 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 SFNP31947 248 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 SSTR3P32745 418 aaPredicted RBP14.22□□□□□ -0.13
SNX1-209ENST00000559961 LEXMQ3ZCV2 418 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 GALNT17Q6IS24 598 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 CMTR2Q8IYT2 770 aaKnown RBP14.22□□□□□ -0.13
SNX1-209ENST00000559961 FAM177A1Q8N128 213 aaPredicted RBP14.22□□□□□ -0.13
SNX1-209ENST00000559961 ZNF274Q96GC6 653 aaPredicted RBP14.22□□□□□ -0.13
SNX1-209ENST00000559961 NECAB3Q96P71 396 aaPredicted RBP14.22□□□□□ -0.13
SNX1-209ENST00000559961 UIMC1Q96RL1 719 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 TEKT3Q9BXF9 490 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 OSBPL7Q9BZF2 842 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 ZSWIM6Q9HCJ5 1215 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 C1orf112Q9NSG2 853 aa14.22□□□□□ -0.13
SNX1-209ENST00000559961 VPS54Q9P1Q0 977 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms