RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 RCN2Q14257 317 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 ZNF423Q2M1K9 1284 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 CCDC62Q6P9F0 684 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 TUBA3EQ6PEY2 450 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 CCDC81Q6ZN84 652 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 DGLUCYQ7Z3D6 616 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 PPP1R42Q7Z4L9 355 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 DDHD1Q8NEL9 900 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 NOC3LQ8WTT2 800 aaKnown RBP9.15□□□□□ -0.95
USP3-211ENST00000559257 CDKL2Q92772 493 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 ERP27Q96DN0 273 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 SCYL1Q96KG9 808 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 PPP1R10Q96QC0 940 aaKnown RBP9.15□□□□□ -0.95
USP3-211ENST00000559257 MMS19Q96T76 1030 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 FAM129AQ9BZQ8 928 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 PSTPIP2Q9H939 334 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 CNOT10Q9H9A5 744 aaKnown RBP9.15□□□□□ -0.95
USP3-211ENST00000559257 VTA1Q9NP79 307 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.15□□□□□ -0.95
USP3-211ENST00000559257 STAP2Q9UGK3 403 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 ZNHIT2Q9UHR6 403 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 KLF15Q9UIH9 416 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 RCOR1Q9UKL0 485 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 TRIM17Q9Y577 477 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 SAR1BQ9Y6B6 198 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 ABCA6Q8N139 1617 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 PDS5AQ29RF7 1337 aaKnown RBP9.14□□□□□ -0.95
USP3-211ENST00000559257 ANKRD34BA5PLL1 514 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 GNAT3A8MTJ3 354 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 AP3B1O00203 1094 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 ATP9AO75110 1047 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 CES1P23141 567 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 LMOD1P29536 600 aaPredicted RBP9.14□□□□□ -0.95
USP3-211ENST00000559257 GJA9P57773 515 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 MYL5Q02045 173 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 PROSER3Q2NL68 480 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 WASHC2DQ5SRD0 308 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 C10orf76Q5T2E6 689 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 NDUFAF5Q5TEU4 345 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 AGBL2Q5U5Z8 902 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 LRRC8BQ6P9F7 803 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 KLHL35Q6PF15 583 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 ZNF662Q6ZS27 426 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 TRIM67Q6ZTA4 783 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 VASH1Q7L8A9 365 aaPredicted RBP9.14□□□□□ -0.95
USP3-211ENST00000559257 HDGFL2Q7Z4V5 671 aaPredicted RBP9.14□□□□□ -0.95
USP3-211ENST00000559257 C16orf71Q8IYS4 520 aaPredicted RBP9.14□□□□□ -0.95
USP3-211ENST00000559257 TRIML2Q8N7C3 387 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 LSMEM1Q8N8F7 131 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 DPF2Q92785 391 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 PEX13Q92968 403 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 LTV1Q96GA3 475 aaPredicted RBP9.14□□□□□ -0.95
USP3-211ENST00000559257 C1orf74Q96LT6 269 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 XPO6Q96QU8 1125 aaKnown RBP9.14□□□□□ -0.95
USP3-211ENST00000559257 ERP44Q9BS26 406 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 DDX43Q9NXZ2 648 aaKnown RBP9.14□□□□□ -0.95
USP3-211ENST00000559257 STOML1Q9UBI4 398 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 IP6K2Q9UHH9 426 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 XPO7Q9UIA9 1087 aaKnown RBP9.14□□□□□ -0.95
USP3-211ENST00000559257 ZMYND8Q9ULU4 1186 aaPredicted RBP9.14□□□□□ -0.95
USP3-211ENST00000559257 ZC3H13Q5T200 1668 aaKnown RBP9.14□□□□□ -0.95
USP3-211ENST00000559257 KNDC1Q76NI1 1749 aa9.14□□□□□ -0.95
USP3-211ENST00000559257 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 SH3PXD2BA1X283 911 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 E9PMD0 336 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 HIP1O00291 1037 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 ECE2O60344 883 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 TFRCP02786 760 aaKnown RBP9.13□□□□□ -0.95
USP3-211ENST00000559257 RXRAP19793 462 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 CD9P21926 228 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 HSD17B4P51659 736 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 AP3M2P53677 418 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 NIPAL4Q0D2K0 466 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 BBS9Q3SYG4 887 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 ZCCHC8Q6NZY4 707 aaKnown RBP9.13□□□□□ -0.95
USP3-211ENST00000559257 CCDC174Q6PII3 467 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 B3GNT6Q6ZMB0 384 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 CCDC129Q6ZRS4 1044 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 PIGOQ8TEQ8 1089 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 LPIN2Q92539 896 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 BRF1Q92994 677 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 CCDC51Q96ER9 411 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 GIMAP5Q96F15 307 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 FNBP1Q96RU3 617 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 CRNKL1Q9BZJ0 848 aaKnown RBP9.13□□□□□ -0.95
USP3-211ENST00000559257 MRGBPQ9NV56 204 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 STK32BQ9NY57 414 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 NKX1-2Q9UD57 310 aaPredicted RBP9.13□□□□□ -0.95
USP3-211ENST00000559257 EXOC7Q9UPT5 735 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 AKAP12Q02952 1782 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 ABCC4O15439 1325 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 WDR17Q8IZU2 1322 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 ERVK-7P63135 1459 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 A0A1W2PQ67 120 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 A8MUI8 341 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 AKR1B15C9JRZ8 316 aaPredicted RBP9.13□□□□□ -0.95
USP3-211ENST00000559257 ADAM23O75077 832 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 FARP2O94887 1054 aaPredicted RBP9.13□□□□□ -0.95
USP3-211ENST00000559257 RTP1P59025 263 aa9.13□□□□□ -0.95
USP3-211ENST00000559257 DSTNP60981 165 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms