RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 WNT8BQ93098 351 aa12.04□□□□□ -0.48
LINC00239-201ENST00000556973 SNX21Q969T3 373 aa12.04□□□□□ -0.48
LINC00239-201ENST00000556973 INTS4Q96HW7 963 aaKnown RBP12.04□□□□□ -0.48
LINC00239-201ENST00000556973 FAM167AQ96KS9 214 aa12.04□□□□□ -0.48
LINC00239-201ENST00000556973 TUBE1Q9UJT0 475 aa12.04□□□□□ -0.48
LINC00239-201ENST00000556973 NOL7Q9UMY1 257 aaKnown RBP12.04□□□□□ -0.48
LINC00239-201ENST00000556973 PCDHA12Q9UN75 941 aa12.04□□□□□ -0.48
LINC00239-201ENST00000556973 PCDHA2Q9Y5H9 948 aa12.04□□□□□ -0.48
LINC00239-201ENST00000556973 RSPH10B2B2RC85 870 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 K7ELQ4 463 aaPredicted RBP12.03□□□□□ -0.48
LINC00239-201ENST00000556973 DKC1O60832 514 aaKnown RBP eCLIP12.03□□□□□ -0.48
LINC00239-201ENST00000556973 RSPH10BP0C881 870 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 ATP2B1P20020 1258 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 KLRC1P26715 233 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 CALCRLQ16602 461 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 FAM26DQ5JW98 314 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 MTHFD1LQ6UB35 978 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 NME8Q8N427 588 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 HERVK_113Q902F9 699 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 VWCEQ96DN2 955 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 RNPC3Q96LT9 517 aaKnown RBP12.03□□□□□ -0.48
LINC00239-201ENST00000556973 MTMR9Q96QG7 549 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 FTOQ9C0B1 505 aaKnown RBP eCLIP12.03□□□□□ -0.48
LINC00239-201ENST00000556973 MTIF3Q9H2K0 278 aaKnown RBP12.03□□□□□ -0.48
LINC00239-201ENST00000556973 VAV3Q9UKW4 847 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 CEP131Q9UPN4 1083 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 IGSF9BQ9UPX0 1349 aa12.03□□□□□ -0.48
LINC00239-201ENST00000556973 KIF28PB7ZC32 967 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 EML1O00423 815 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 WNT7AO00755 349 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 ZNF862O60290 1169 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 CXCL10P02778 98 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 OATP04181 439 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 P4HBP07237 508 aaKnown RBP12.02□□□□□ -0.49
LINC00239-201ENST00000556973 ACTN1P12814 892 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 MCM7P33993 719 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 TXKP42681 527 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 FXR1P51114 621 aaKnown RBP eCLIP12.02□□□□□ -0.49
LINC00239-201ENST00000556973 PSMC5P62195 406 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 GPNMBQ14956 572 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 EPHA7Q15375 998 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 ZNF174Q15697 407 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 TTC38Q5R3I4 469 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 RASIP1Q5U651 963 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 MCTP1Q6DN14 999 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 TRAF7Q6Q0C0 670 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 OTOP2Q7RTS6 562 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 DNAJB3Q8WWF6 145 aa12.02□□□□□ -0.49
LINC00239-201ENST00000556973 TTC12Q9H892 705 aaPredicted RBP12.02□□□□□ -0.49
LINC00239-201ENST00000556973 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.01□□□□□ -0.49
LINC00239-201ENST00000556973 SMIM35A0A1B0GVV1 85 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.01□□□□□ -0.49
LINC00239-201ENST00000556973 ZBTB42B2RXF5 422 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 MAGEB2O15479 319 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 NBNO60934 754 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 PDCP20941 246 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 QARSP47897 775 aaKnown RBP12.01□□□□□ -0.49
LINC00239-201ENST00000556973 SPIRE1Q08AE8 756 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 UGCGQ16739 394 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 XKR3Q5GH77 459 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 IER5Q5VY09 327 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 NCAPH2Q6IBW4 605 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 RUFY4Q6ZNE9 571 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 TRMT1LQ7Z2T5 733 aaKnown RBP12.01□□□□□ -0.49
LINC00239-201ENST00000556973 TRAPPC12Q8WVT3 735 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 NIFKQ9BYG3 293 aaKnown RBP12.01□□□□□ -0.49
LINC00239-201ENST00000556973 CEP290O15078 2479 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 EVPLQ92817 2033 aa12.01□□□□□ -0.49
LINC00239-201ENST00000556973 BAIAP3O94812 1187 aa12□□□□□ -0.49
LINC00239-201ENST00000556973 CHRNA1P02708 482 aa12□□□□□ -0.49
LINC00239-201ENST00000556973 TOB1P50616 345 aaPredicted RBP12□□□□□ -0.49
LINC00239-201ENST00000556973 SMAD3P84022 425 aaKnown RBP12□□□□□ -0.49
LINC00239-201ENST00000556973 PRKCEQ02156 737 aa12□□□□□ -0.49
LINC00239-201ENST00000556973 RILPL1Q5EBL4 403 aa12□□□□□ -0.49
LINC00239-201ENST00000556973 GPR153Q6NV75 609 aa12□□□□□ -0.49
LINC00239-201ENST00000556973 CNKSR3Q6P9H4 555 aa12□□□□□ -0.49
LINC00239-201ENST00000556973 HSCBQ8IWL3 235 aa12□□□□□ -0.49
LINC00239-201ENST00000556973 BANK1Q8NDB2 785 aa12□□□□□ -0.49
LINC00239-201ENST00000556973 ZBTB10Q96DT7 871 aa12□□□□□ -0.49
LINC00239-201ENST00000556973 TMEM60Q9H2L4 133 aa12□□□□□ -0.49
LINC00239-201ENST00000556973 ABHD14A-ACY1A0A1B0GW23 586 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 DDX11L8A8MPP1 907 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 M0QZ92 97 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 LAD1O00515 517 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 SOX1O00570 391 aaPredicted RBP11.99□□□□□ -0.49
LINC00239-201ENST00000556973 EFCAB14O75071 495 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 SLITRK3O94933 977 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 STBD1O95210 358 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 C22orf31O95567 290 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 CTSHP09668 335 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 OR52Z1P0C646 297 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 TMOD1P28289 359 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 TECP42680 631 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 MRPS6P82932 125 aaKnown RBP11.99□□□□□ -0.49
LINC00239-201ENST00000556973 MGAT3Q09327 533 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 IKBKEQ14164 716 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 MBTPS1Q14703 1052 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 TARBP2Q15633 366 aaKnown RBP11.99□□□□□ -0.49
LINC00239-201ENST00000556973 PLEKHG4Q58EX7 1191 aa11.99□□□□□ -0.49
LINC00239-201ENST00000556973 EFCAB12Q6NXP0 572 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms