RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 KCNA2P16389 499 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 PDIA3P30101 505 aaKnown RBP8.33□□□□□ -1.08
SCFD1-222ENST00000556768 SREBF1P36956 1147 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 CCT2P78371 535 aaKnown RBP8.33□□□□□ -1.08
SCFD1-222ENST00000556768 ARHGAP4P98171 946 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 ZNF200P98182 395 aaPredicted RBP8.33□□□□□ -1.08
SCFD1-222ENST00000556768 SSRP1Q08945 709 aaKnown RBP8.33□□□□□ -1.08
SCFD1-222ENST00000556768 SEMA3FQ13275 785 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 ZNF618Q5T7W0 954 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 JAKMIP3Q5VZ66 844 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 SLC39A7Q92504 469 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 PHKBQ93100 1093 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 ZNF274Q96GC6 653 aaPredicted RBP8.33□□□□□ -1.08
SCFD1-222ENST00000556768 SLC26A6Q9BXS9 759 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 AGXT2Q9BYV1 514 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 ZMYND12Q9H0C1 365 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 BCAS3Q9H6U6 928 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 PDRG1Q9NUG6 133 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 CHD7Q9P2D1 2997 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 ESYT2A0FGR8 921 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 RRN3P2A6NIE6 340 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 MEIS1O00470 390 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 TREHO43280 583 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 IFNAR1P17181 557 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 XBP1P17861 261 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 IGFBP4P22692 258 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 SLC26A2P50443 739 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 RABGGTBP53611 331 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 NLRP5P59047 1200 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 SETQ01105 290 aaPredicted RBP8.33□□□□□ -1.08
SCFD1-222ENST00000556768 PPFIA1Q13136 1202 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 ANKRD1Q15327 319 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 TRIM50Q86XT4 487 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 HERC6Q8IVU3 1022 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 CTAGE1Q96RT6 745 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 C22orf23Q9BZE7 217 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 NKX2-4Q9H2Z4 354 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 TBC1D22BQ9NU19 505 aa8.33□□□□□ -1.08
SCFD1-222ENST00000556768 NFASCO94856 1347 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 BACH1O14867 736 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 LGR5O75473 907 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 CXCL10P02778 98 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 AMHP03971 560 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 MARK3P27448 753 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 STAT5BP51692 787 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 EVCP57679 992 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 FAM160B1Q5W0V3 765 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 NIPA1Q7RTP0 329 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 PLPPR4Q7Z2D5 763 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 PLA2G4DQ86XP0 818 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.32□□□□□ -1.08
SCFD1-222ENST00000556768 CYP2W1Q8TAV3 490 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 SEPT8Q92599 483 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 DHX38Q92620 1227 aaKnown RBP8.32□□□□□ -1.08
SCFD1-222ENST00000556768 PGBD1Q96JS3 809 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 RAD9AQ99638 391 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 UPF3BQ9BZI7 483 aaKnown RBP8.32□□□□□ -1.08
SCFD1-222ENST00000556768 PRDM12Q9H4Q4 367 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 SH3GLB2Q9NR46 395 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 TUBE1Q9UJT0 475 aa8.32□□□□□ -1.08
SCFD1-222ENST00000556768 BAZ2BQ9UIF8 2168 aaKnown RBP8.32□□□□□ -1.08
SCFD1-222ENST00000556768 GSTTP1A0A1W2PQM5 241 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 M0QZ92 97 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 IPO5O00410 1097 aaKnown RBP8.31□□□□□ -1.08
SCFD1-222ENST00000556768 NBNO60934 754 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 DEXIO95424 95 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 CA3P07451 260 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 CYP3A4P08684 503 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 CTSHP09668 335 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 ANAPC15P60006 121 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 ACTR2P61160 394 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 WDR5P61964 334 aaKnown RBP8.31□□□□□ -1.08
SCFD1-222ENST00000556768 IGBP1P78318 339 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 GRIK4Q16099 956 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 IER5Q5VY09 327 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 GALNT17Q6IS24 598 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 MIS18BP1Q6P0N0 1132 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 CKAP2LQ8IYA6 745 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 FAM177A1Q8N128 213 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-222ENST00000556768 DBF4BQ8NFT6 615 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 LMBR1Q8WVP7 490 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 APBB2Q92870 758 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 ZNF577Q9BSK1 485 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 SLKQ9H2G2 1235 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-222ENST00000556768 TMEM134Q9H6X4 195 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 NCOA5Q9HCD5 579 aaKnown RBP8.31□□□□□ -1.08
SCFD1-222ENST00000556768 AGO4Q9HCK5 861 aaKnown RBP8.31□□□□□ -1.08
SCFD1-222ENST00000556768 TMEM260Q9NX78 707 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 SAMM50Q9Y512 469 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 C3orf80F5H4A9 247 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 DLL1O00548 723 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 PPFIA3O75145 1194 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 ARP10275 920 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 C7P10643 843 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 HOXC8P31273 242 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 USP11P51784 963 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 STK3Q13188 491 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 TRIM71Q2Q1W2 868 aaKnown RBP8.31□□□□□ -1.08
SCFD1-222ENST00000556768 PRR16Q569H4 304 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 MYOCDQ8IZQ8 938 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms