RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 OAZ3Q9UMX2 235 aa6.41□□□□□ -1.38
SCFD1-217ENST00000555953 PCDHA9Q9Y5H5 950 aa6.41□□□□□ -1.38
SCFD1-217ENST00000555953 KCNK3O14649 394 aa6.4□□□□□ -1.38
SCFD1-217ENST00000555953 AOAHP28039 575 aa6.4□□□□□ -1.38
SCFD1-217ENST00000555953 MC4RP32245 332 aa6.4□□□□□ -1.38
SCFD1-217ENST00000555953 GJA4P35212 333 aa6.4□□□□□ -1.38
SCFD1-217ENST00000555953 ADCY8P40145 1251 aa6.4□□□□□ -1.38
SCFD1-217ENST00000555953 AGBL4Q5VU57 503 aa6.4□□□□□ -1.38
SCFD1-217ENST00000555953 USP51Q70EK9 711 aa6.4□□□□□ -1.38
SCFD1-217ENST00000555953 ZDHHC5Q9C0B5 715 aa6.4□□□□□ -1.38
SCFD1-217ENST00000555953 CCDC113Q9H0I3 377 aa6.4□□□□□ -1.38
SCFD1-217ENST00000555953 SMURF1Q9HCE7 757 aa6.4□□□□□ -1.38
SCFD1-217ENST00000555953 INCENPQ9NQS7 918 aa6.4□□□□□ -1.38
SCFD1-217ENST00000555953 HS3ST3A1Q9Y663 406 aa6.4□□□□□ -1.38
SCFD1-217ENST00000555953 PRAMEF25A6NGN4 478 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 MATN2O00339 956 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 RAD17O75943 681 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 FAM153BP0C7A2 387 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 CR2P20023 1033 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 COMTP21964 271 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 GABREP78334 506 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 ST5P78524 1137 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 KLF10Q13118 480 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 SEC23AQ15436 765 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 ZMAT1Q5H9K5 638 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 RNF207Q6ZRF8 634 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 EDAQ92838 391 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 KIAA1683Q9H0B3 1180 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 PCED1AQ9H1Q7 454 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 GALNT8Q9NY28 637 aa6.39□□□□□ -1.39
SCFD1-217ENST00000555953 CCDC66A2RUB6 948 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 CRTAMO95727 393 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 MPIG6BO95866 241 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 HMGCRP04035 888 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 DNM2P50570 870 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 KCNQ1P51787 676 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 DUSP8Q13202 625 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 STILQ15468 1287 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 CRY1Q16526 586 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 TBR1Q16650 682 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 Q6ZSN1 163 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 EP400NLQ6ZTU2 488 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 LARP4Q71RC2 724 aaKnown RBP eCLIP6.38□□□□□ -1.39
SCFD1-217ENST00000555953 SCYL1Q96KG9 808 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 IPO9Q96P70 1041 aaKnown RBP6.38□□□□□ -1.39
SCFD1-217ENST00000555953 ZNF341Q9BYN7 854 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 ING1Q9UK53 422 aaPredicted RBP6.38□□□□□ -1.39
SCFD1-217ENST00000555953 NR2E1Q9Y466 385 aa6.38□□□□□ -1.39
SCFD1-217ENST00000555953 CDC14BO60729 498 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 CLASP2O75122 1294 aaKnown RBP6.37□□□□□ -1.39
SCFD1-217ENST00000555953 NAT1P18440 290 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 ACO1P21399 889 aaKnown RBP6.37□□□□□ -1.39
SCFD1-217ENST00000555953 ZC3H6P61129 1189 aaKnown RBP6.37□□□□□ -1.39
SCFD1-217ENST00000555953 HERVK_113P62684 666 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 FOXE3Q13461 319 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 NFYCQ13952 458 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 NRN1LQ496H8 165 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 NAALADL2Q58DX5 795 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 LRSAM1Q6UWE0 723 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 CXXC5Q7LFL8 322 aaKnown RBP6.37□□□□□ -1.39
SCFD1-217ENST00000555953 ZC3H7AQ8IWR0 971 aaKnown RBP6.37□□□□□ -1.39
SCFD1-217ENST00000555953 CFHR4Q92496 578 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 WNK4Q96J92 1243 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 DHRS4Q9BTZ2 278 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 PLA2G12BQ9BX93 195 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 AMNQ9BXJ7 453 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 CDC42EP3Q9UKI2 254 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 MRPS23Q9Y3D9 190 aaKnown RBP6.37□□□□□ -1.39
SCFD1-217ENST00000555953 SLC30A1Q9Y6M5 507 aa6.37□□□□□ -1.39
SCFD1-217ENST00000555953 NPIPB8E9PQR5 432 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 ARHGAP6O43182 974 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 LACTBP83111 547 aaPredicted RBP6.36□□□□□ -1.39
SCFD1-217ENST00000555953 EIF4HQ15056 248 aaKnown RBP6.36□□□□□ -1.39
SCFD1-217ENST00000555953 USP39Q53GS9 565 aaKnown RBP6.36□□□□□ -1.39
SCFD1-217ENST00000555953 TM4SF20Q53R12 229 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 FAM47CQ5HY64 1035 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 MIIPQ5JXC2 388 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 NBPF6Q5VWK0 638 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 FSTL4Q6MZW2 842 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 POLNQ7Z5Q5 900 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 CISD2Q8N5K1 135 aaKnown RBP6.36□□□□□ -1.39
SCFD1-217ENST00000555953 EXTL1Q92935 676 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 ZNF503Q96F45 646 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 NBPF4Q96M43 638 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 OR14A2Q96R54 314 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 BTBD2Q9BX70 525 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 UCKL1Q9NWZ5 548 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 PPP1R1BQ9UD71 204 aaPredicted RBP6.36□□□□□ -1.39
SCFD1-217ENST00000555953 FBXO10Q9UK96 956 aa6.36□□□□□ -1.39
SCFD1-217ENST00000555953 PLSCR1O15162 318 aa6.35□□□□□ -1.39
SCFD1-217ENST00000555953 GSTA4O15217 222 aa6.35□□□□□ -1.39
SCFD1-217ENST00000555953 MMEP08473 750 aa6.35□□□□□ -1.39
SCFD1-217ENST00000555953 CD83Q01151 205 aa6.35□□□□□ -1.39
SCFD1-217ENST00000555953 KANK2Q63ZY3 851 aa6.35□□□□□ -1.39
SCFD1-217ENST00000555953 IGFL4Q6B9Z1 124 aa6.35□□□□□ -1.39
SCFD1-217ENST00000555953 KRTAP5-3Q6L8H2 238 aa6.35□□□□□ -1.39
SCFD1-217ENST00000555953 NOSTRINQ8IVI9 506 aa6.35□□□□□ -1.39
SCFD1-217ENST00000555953 C12orf65Q9H3J6 166 aaKnown RBP6.35□□□□□ -1.39
SCFD1-217ENST00000555953 SLC52A2Q9HAB3 445 aa6.35□□□□□ -1.39
SCFD1-217ENST00000555953 SIRPGQ9P1W8 387 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms