RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 PCDHGA2Q9Y5H1 932 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 ATP23Q9Y6H3 246 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 ARID1BQ8NFD5 2236 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-209ENST00000553280 KLHL33A6NCF5 533 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 LTFP02788 710 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 VCAM1P19320 739 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 PTX3P26022 381 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-209ENST00000553280 CYP2C19P33261 490 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 MVKQ03426 396 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 BIRC2Q13490 618 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 PDCD1Q15116 288 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 SEC23AQ15436 765 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 MINDY4Q4G0A6 757 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 HSF5Q4G112 596 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-209ENST00000553280 EMC4Q5J8M3 183 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 AMOTL1Q8IY63 956 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 CMTR2Q8IYT2 770 aaKnown RBP6.58□□□□□ -1.36
SCFD1-209ENST00000553280 ORAI2Q96SN7 254 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 PPP1R16BQ96T49 567 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 NUP88Q99567 741 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-209ENST00000553280 PDGFDQ9GZP0 370 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-209ENST00000553280 PDLIM7Q9NR12 457 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 FBLN5Q9UBX5 448 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 GPR160Q9UJ42 338 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 ACSL6Q9UKU0 697 aa6.58□□□□□ -1.36
SCFD1-209ENST00000553280 A0A1W2PQ27 194 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 A0A1W2PQ64 194 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 A0A1W2PQC6 194 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 A0A1W2PQD8 194 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 FITM1A5D6W6 292 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 MAFKO60675 156 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 TADA3O75528 432 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 C1QTNF9P0C862 333 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 CD40P25942 277 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 GJA4P35212 333 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 EPHA5P54756 1037 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 HDAC1Q13547 482 aaPredicted RBP6.57□□□□□ -1.36
SCFD1-209ENST00000553280 CHRNA2Q15822 529 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 STEAP3Q658P3 488 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 CPZQ66K79 652 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 GALNT18Q6P9A2 607 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 CEP128Q6ZU80 1094 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 ANKS4BQ8N8V4 417 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 MORC4Q8TE76 937 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 HSPBAP1Q96EW2 488 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 C16orf92Q96LL3 132 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 ACAP3Q96P50 834 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 RPS6KC1Q96S38 1066 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 CD244Q9BZW8 370 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 MS4A5Q9H3V2 200 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 SMOC1Q9H4F8 434 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 OBP2AQ9NY56 170 aa6.57□□□□□ -1.36
SCFD1-209ENST00000553280 NFIBO00712 420 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 HGSO14964 777 aaPredicted RBP6.56□□□□□ -1.36
SCFD1-209ENST00000553280 KDM1AO60341 852 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 H2AFYO75367 372 aaKnown RBP6.56□□□□□ -1.36
SCFD1-209ENST00000553280 USP2O75604 605 aaPredicted RBP6.56□□□□□ -1.36
SCFD1-209ENST00000553280 TSPAN15O95858 294 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 NTRK1P04629 796 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 SDHAP31040 664 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 SLC6A11P48066 632 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 TMEM132BQ14DG7 1078 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 EPHA7Q15375 998 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 SLC14A2Q15849 920 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 LCE1DQ5T752 114 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 GORABQ5T7V8 394 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 EFCAB2Q5VUJ9 269 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 ESRP1Q6NXG1 681 aaKnown RBP6.56□□□□□ -1.36
SCFD1-209ENST00000553280 SLC4A10Q6U841 1118 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 KCTD1Q719H9 257 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 EPM2AIP1Q7L775 607 aaPredicted RBP6.56□□□□□ -1.36
SCFD1-209ENST00000553280 SPPL2CQ8IUH8 684 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 SIRT2Q8IXJ6 389 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 LILRA2Q8N149 483 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 BHLHE22Q8NFJ8 381 aaPredicted RBP6.56□□□□□ -1.36
SCFD1-209ENST00000553280 SLC39A13Q96H72 371 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 ZNF496Q96IT1 587 aaPredicted RBP6.56□□□□□ -1.36
SCFD1-209ENST00000553280 AIFM3Q96NN9 605 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 USP36Q9P275 1121 aaKnown RBP6.56□□□□□ -1.36
SCFD1-209ENST00000553280 IMPACTQ9P2X3 320 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 ZBTB21Q9ULJ3 1066 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 TAF6LQ9Y6J9 622 aa6.56□□□□□ -1.36
SCFD1-209ENST00000553280 FAM90A27PA6NNH2 459 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 NOTOA8MTQ0 251 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 VSTM5A8MXK1 200 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 NRDCO43847 1150 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 PSPNO60542 156 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 BUB1BO60566 1050 aaPredicted RBP6.55□□□□□ -1.36
SCFD1-209ENST00000553280 KRT1P04264 644 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 MSL3P1P0C860 447 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 LPOP22079 712 aaPredicted RBP6.55□□□□□ -1.36
SCFD1-209ENST00000553280 FNTBP49356 437 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 CHRNEQ04844 493 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 ADCY1Q08828 1119 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 NME9Q86XW9 330 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 PHOSPHO1Q8TCT1 267 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 CLIP3Q96DZ5 547 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 ZNF700Q9H0M5 742 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 PRDM11Q9NQV5 511 aa6.55□□□□□ -1.36
SCFD1-209ENST00000553280 KCNG1Q9UIX4 513 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms