RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ZFHX4Q86UP3 3567 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 HIDE1A8MVS5 230 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 C2CD4DB7Z1M9 353 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 STAM2O75886 525 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 UBE3AQ05086 875 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 SPOUT1Q5T280 376 aaKnown RBP14.91□□□□□ -0.02
VPS29-211ENST00000553128 TRAPPC12Q8WVT3 735 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 NKD2Q969F2 451 aaPredicted RBP14.91□□□□□ -0.02
VPS29-211ENST00000553128 CDCA3Q99618 268 aaPredicted RBP14.91□□□□□ -0.02
VPS29-211ENST00000553128 FTHL17Q9BXU8 183 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 POMKQ9H5K3 350 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 RIOX1Q9H6W3 641 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 SENP2Q9HC62 589 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 TMEM260Q9NX78 707 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 LRFN2Q9ULH4 789 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 SORCS3Q9UPU3 1222 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 PCDHB12Q9Y5F1 795 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 TRPV2Q9Y5S1 764 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 IGSF9BQ9UPX0 1349 aa14.91□□□□□ -0.02
VPS29-211ENST00000553128 KAT6AQ92794 2004 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 TBKBP1A7MCY6 615 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 ASGR2P07307 311 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 INSRRP14616 1297 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 KCNA2P16389 499 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 PAK2Q13177 524 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 MTMR3Q13615 1198 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 ASTLQ6HA08 431 aaPredicted RBP14.9□□□□□ -0.02
VPS29-211ENST00000553128 USP17L6PQ6QN14 398 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 CYB5R4Q7L1T6 521 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 THNSL1Q8IYQ7 743 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 COLGALT1Q8NBJ5 622 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 PIBF1Q8WXW3 757 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 RILPL2Q969X0 211 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 PCYT2Q99447 389 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 UBAC1Q9BSL1 405 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 TYW1Q9NV66 732 aaKnown RBP14.9□□□□□ -0.02
VPS29-211ENST00000553128 ERAP1Q9NZ08 941 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 PKD2L1Q9P0L9 805 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 SQORQ9Y6N5 450 aa14.9□□□□□ -0.02
VPS29-211ENST00000553128 BAZ2BQ9UIF8 2168 aaKnown RBP14.9□□□□□ -0.02
VPS29-211ENST00000553128 PNMA6FA0A0J9YX94 578 aa14.89□□□□□ -0.03
VPS29-211ENST00000553128 MED19A0JLT2 244 aaPredicted RBP14.89□□□□□ -0.03
VPS29-211ENST00000553128 WEE2P0C1S8 567 aa14.89□□□□□ -0.03
VPS29-211ENST00000553128 SDSP20132 328 aa14.89□□□□□ -0.03
VPS29-211ENST00000553128 SARSP49591 514 aaKnown RBP14.89□□□□□ -0.03
VPS29-211ENST00000553128 IER5Q5VY09 327 aa14.89□□□□□ -0.03
VPS29-211ENST00000553128 PCNX4Q63HM2 1172 aa14.89□□□□□ -0.03
VPS29-211ENST00000553128 UBALD2Q8IYN6 164 aa14.89□□□□□ -0.03
VPS29-211ENST00000553128 FEZF2Q8TBJ5 459 aa14.89□□□□□ -0.03
VPS29-211ENST00000553128 SEPT1Q8WYJ6 367 aa14.89□□□□□ -0.03
VPS29-211ENST00000553128 GLG1Q92896 1179 aa14.89□□□□□ -0.03
VPS29-211ENST00000553128 CWH43Q9H720 699 aa14.89□□□□□ -0.03
VPS29-211ENST00000553128 PCDHB7Q9Y5E2 793 aa14.89□□□□□ -0.03
VPS29-211ENST00000553128 ZNF292O60281 2723 aa14.88□□□□□ -0.03
VPS29-211ENST00000553128 LOXHD1Q8IVV2 1947 aa14.88□□□□□ -0.03
VPS29-211ENST00000553128 ITGB5P18084 799 aa14.88□□□□□ -0.03
VPS29-211ENST00000553128 NT5C2P49902 561 aa14.88□□□□□ -0.03
VPS29-211ENST00000553128 NFX1Q12986 1120 aaKnown RBP14.88□□□□□ -0.03
VPS29-211ENST00000553128 GRM4Q14833 912 aa14.88□□□□□ -0.03
VPS29-211ENST00000553128 CWF19L1Q69YN2 538 aaKnown RBP14.88□□□□□ -0.03
VPS29-211ENST00000553128 RASGRP4Q8TDF6 673 aa14.88□□□□□ -0.03
VPS29-211ENST00000553128 TCF25Q9BQ70 676 aa14.88□□□□□ -0.03
VPS29-211ENST00000553128 CELF4Q9BZC1 486 aaKnown RBP14.88□□□□□ -0.03
VPS29-211ENST00000553128 CDHR5Q9HBB8 845 aa14.88□□□□□ -0.03
VPS29-211ENST00000553128 NR2E1Q9Y466 385 aa14.88□□□□□ -0.03
VPS29-211ENST00000553128 FNDC1Q4ZHG4 1894 aaPredicted RBP14.88□□□□□ -0.03
VPS29-211ENST00000553128 MEIS2O14770 477 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 PI15O43692 258 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 FGFR1P11362 822 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 PBX3P40426 434 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 KANK3Q6NY19 840 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 CWC27Q6UX04 472 aaKnown RBP14.87□□□□□ -0.03
VPS29-211ENST00000553128 NLRX1Q86UT6 975 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 RMDN1Q96DB5 314 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 KRT23Q9C075 422 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 SMARCAD1Q9H4L7 1026 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 ERVK-5Q9HDB9 667 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 ENTPD7Q9NQZ7 604 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 AAASQ9NRG9 546 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 NOC2LQ9Y3T9 749 aaKnown RBP14.87□□□□□ -0.03
VPS29-211ENST00000553128 MYO10Q9HD67 2058 aa14.87□□□□□ -0.03
VPS29-211ENST00000553128 FSD2A1L4K1 749 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 RRN3P2A6NIE6 340 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 M0QZ92 97 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 SRGAP2BP0DMP2 458 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 MFAP1P55081 439 aaKnown RBP14.86□□□□□ -0.03
VPS29-211ENST00000553128 PDE12Q6L8Q7 609 aaKnown RBP14.86□□□□□ -0.03
VPS29-211ENST00000553128 LRRC55Q6ZSA7 311 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 TICAM2Q86XR7 235 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 GIMAP8Q8ND71 665 aaPredicted RBP14.86□□□□□ -0.03
VPS29-211ENST00000553128 SMARCC2Q8TAQ2 1214 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 TMEM40Q8WWA1 233 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 MRPS27Q92552 414 aaKnown RBP14.86□□□□□ -0.03
VPS29-211ENST00000553128 GPRASP2Q96D09 838 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 ADAM2Q99965 735 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 LIMD1Q9UGP4 676 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 GINS2Q9Y248 185 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 PCDHA2Q9Y5H9 948 aa14.86□□□□□ -0.03
VPS29-211ENST00000553128 C9IYK1 514 aa14.85□□□□□ -0.03
VPS29-211ENST00000553128 HOXB8P17481 243 aaPredicted RBP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms