RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CYFIP1Q7L576 1253 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 SLFN12Q8IYM2 578 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 GPR161Q8N6U8 529 aaKnown RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 FAM151AQ8WW52 585 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 MTMR8Q96EF0 704 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 FAM212AQ96EL1 285 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 PPP1R16BQ96T49 567 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 PAGR1Q9BTK6 254 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 ANKZF1Q9H8Y5 726 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 DOCK2Q92608 1830 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 CENPFP49454 3210 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 CCDC88AQ3V6T2 1871 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 CEP104O60308 925 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 ATP9AO75110 1047 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 PALMO75781 387 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 TBC1D8O95759 1140 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 H2AFXP16104 143 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 GCFC2P16383 781 aaKnown RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 CLK2P49760 499 aaKnown RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 USP11P51784 963 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 BAATQ14032 418 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 CEP55Q53EZ4 464 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 C2CD6Q53TS8 623 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 TATDN1Q6P1N9 297 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 ARHGAP27Q6ZUM4 889 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 PPP1R13LQ8WUF5 828 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 WRNIP1Q96S55 665 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 POP1Q99575 1024 aaKnown RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 NUP58Q9BVL2 599 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 AP1M1Q9BXS5 423 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 VCPKMTQ9H867 229 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 MYOZ2Q9NPC6 264 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 GCNT4Q9P109 453 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 PIM2Q9P1W9 311 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 CNOT7Q9UIV1 285 aaKnown RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 AJAP1Q9UKB5 411 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 ZNRF3Q9ULT6 936 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 RIPK3Q9Y572 518 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 ECM29Q5VYK3 1845 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 LAMB2P55268 1798 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 H3BQF6 201 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 KCNK3O14649 394 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 TLR2O60603 784 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 MYBL2P10244 700 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 DLATP10515 647 aaKnown RBP6.13□□□□□ -1.43
LIMA1-215ENST00000552823 EPB41P11171 864 aaKnown RBP6.13□□□□□ -1.43
LIMA1-215ENST00000552823 CAP2P40123 477 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 VAV2P52735 878 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 SLC12A3P55017 1021 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 RPS6P62753 249 aaKnown RBP6.13□□□□□ -1.43
LIMA1-215ENST00000552823 HLTFQ14527 1009 aaKnown RBP eCLIP6.13□□□□□ -1.43
LIMA1-215ENST00000552823 TRADDQ15628 312 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 KNOP1Q1ED39 458 aaKnown RBP6.13□□□□□ -1.43
LIMA1-215ENST00000552823 SEZ6Q53EL9 994 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 HSP90B2PQ58FF3 399 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 PDXDC1Q6P996 788 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 FAM186BQ8IYM0 893 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 ETNPPLQ8TBG4 499 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 C7orf43Q8WVR3 580 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 RABGGTAQ92696 567 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 LENG9Q96B70 501 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 RMDN3Q96TC7 470 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 DNAJC7Q99615 494 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 LRRC1Q9BTT6 524 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 LRRC27Q9C0I9 530 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 TAOK3Q9H2K8 898 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 KCNMB3Q9NPA1 279 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 MYO1AQ9UBC5 1043 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 DMGDHQ9UI17 866 aaKnown RBP6.13□□□□□ -1.43
LIMA1-215ENST00000552823 SIK3Q9Y2K2 1263 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 FAN1Q9Y2M0 1017 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 MRPL11Q9Y3B7 192 aaKnown RBP6.13□□□□□ -1.43
LIMA1-215ENST00000552823 ITIH6Q6UXX5 1313 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 KDM3AQ9Y4C1 1321 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 A0A1W2PQC6 194 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 RGL2O15211 777 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 HIP1RO75146 1068 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 ENTPD3O75355 529 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 ITGB5P18084 799 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 GJC1P36383 396 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 DALRD3Q5D0E6 543 aaKnown RBP6.13□□□□□ -1.43
LIMA1-215ENST00000552823 ANGEL2Q5VTE6 544 aaKnown RBP6.13□□□□□ -1.43
LIMA1-215ENST00000552823 ARHGEF16Q5VV41 709 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 PADI6Q6TGC4 694 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 HS2ST1Q7LGA3 356 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 GLYCTKQ8IVS8 523 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 SUPT20HQ8NEM7 779 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 KAT5Q92993 513 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 MKL1Q969V6 931 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 BICD1Q96G01 975 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 DEFB129Q9H1M3 183 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 RPAP3Q9H6T3 665 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-215ENST00000552823 ZNF408Q9H9D4 720 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 KCNH7Q9NS40 1196 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 HACL1Q9UJ83 578 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 TMX2Q9Y320 296 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 TIAM2Q8IVF5 1701 aa6.13□□□□□ -1.43
LIMA1-215ENST00000552823 COL22A1Q8NFW1 1626 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 ERLIN1O75477 346 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms