RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 AP5M1Q9H0R1 490 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 SAMD15Q9P1V8 674 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 TESMINQ9Y4I5 508 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 TRBV23OR9-2A0A075B6M9 112 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 C7orf72A4D263 438 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 ARVCFO00192 962 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 MYO1BO43795 1136 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 NPHS1O60500 1241 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 GLRX3O76003 335 aaKnown RBP5.72□□□□□ -1.49
VPS29-205ENST00000548539 KCNA6P17658 529 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 TGM1P22735 817 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 BCL6P41182 706 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 EPHB4P54760 987 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 R3HDM1Q15032 1099 aaKnown RBP5.72□□□□□ -1.49
VPS29-205ENST00000548539 DDX46Q7L014 1031 aaKnown RBP5.72□□□□□ -1.49
VPS29-205ENST00000548539 MIB1Q86YT6 1006 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 AFAP1L2Q8N4X5 818 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 WWC2-AS2Q96NR7 200 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 IPPKQ9H8X2 491 aa5.72□□□□□ -1.49
VPS29-205ENST00000548539 DDX56Q9NY93 547 aaKnown RBP5.72□□□□□ -1.49
VPS29-205ENST00000548539 B4E1Z4 1266 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 M0R2C6 588 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 ZNF623O75123 536 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 SOD2P04179 222 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 PYGMP11217 842 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 NAT1P18440 290 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 GRK2P25098 689 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 GRK3P35626 688 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 DNM2P50570 870 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 RPL11P62913 178 aaKnown RBP5.71□□□□□ -1.5
VPS29-205ENST00000548539 PAK1Q13153 545 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 SMN1Q16637 294 aaKnown RBP5.71□□□□□ -1.5
VPS29-205ENST00000548539 KIZQ2M2Z5 673 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 DDX53Q86TM3 631 aaKnown RBP5.71□□□□□ -1.5
VPS29-205ENST00000548539 NXPE1Q8N323 547 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 PCDH19Q8TAB3 1148 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 STAG1Q8WVM7 1258 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 WNK4Q96J92 1243 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 KCNJ15Q99712 375 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 TMEM168Q9H0V1 697 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 L2HGDHQ9H9P8 463 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 CLDND1Q9NY35 253 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 MCM8Q9UJA3 840 aa5.71□□□□□ -1.5
VPS29-205ENST00000548539 TIMM13Q9Y5L4 95 aaPredicted RBP5.71□□□□□ -1.5
VPS29-205ENST00000548539 ZNF891A8MT65 544 aaPredicted RBP5.7□□□□□ -1.5
VPS29-205ENST00000548539 PATE3B3GLJ2 98 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 CKMP06732 381 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 ZNF28P17035 718 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 POU3F2P20265 443 aaPredicted RBP5.7□□□□□ -1.5
VPS29-205ENST00000548539 FPR2P25090 351 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 LSAMPQ13449 338 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 SLFN13Q68D06 897 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 LHFPL2Q6ZUX7 228 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 NLRP10Q86W26 655 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 TEX2Q8IWB9 1127 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 KBTBD2Q8IY47 623 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 CISD2Q8N5K1 135 aaKnown RBP5.7□□□□□ -1.5
VPS29-205ENST00000548539 DPF3Q92784 378 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 JAM3Q9BX67 310 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.7□□□□□ -1.5
VPS29-205ENST00000548539 NGRNQ9NPE2 291 aaKnown RBP5.7□□□□□ -1.5
VPS29-205ENST00000548539 HOMER2Q9NSB8 354 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 MARCH2Q9P0N8 246 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 KLHL42Q9P2K6 505 aa5.7□□□□□ -1.5
VPS29-205ENST00000548539 CCDC66A2RUB6 948 aa5.69□□□□□ -1.5
VPS29-205ENST00000548539 NPIPB8E9PQR5 432 aa5.69□□□□□ -1.5
VPS29-205ENST00000548539 SGSM2O43147 1006 aa5.69□□□□□ -1.5
VPS29-205ENST00000548539 IL13P35225 146 aa5.69□□□□□ -1.5
VPS29-205ENST00000548539 INHBEP58166 350 aa5.69□□□□□ -1.5
VPS29-205ENST00000548539 ST5P78524 1137 aa5.69□□□□□ -1.5
VPS29-205ENST00000548539 PLEKHG6Q3KR16 790 aa5.69□□□□□ -1.5
VPS29-205ENST00000548539 CEP68Q76N32 757 aa5.69□□□□□ -1.5
VPS29-205ENST00000548539 USP7Q93009 1102 aa5.69□□□□□ -1.5
VPS29-205ENST00000548539 MBD6Q96DN6 1003 aa5.69□□□□□ -1.5
VPS29-205ENST00000548539 PTPN18Q99952 460 aa5.69□□□□□ -1.5
VPS29-205ENST00000548539 WDR33Q9C0J8 1336 aaKnown RBP5.69□□□□□ -1.5
VPS29-205ENST00000548539 FAM47E-STBD1D6RA91 191 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 CBX4O00257 560 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 B4GALT4O60513 344 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 EYA4O95677 639 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 PDGFRBP09619 1106 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 STAT5AP42229 794 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 ID4P47928 161 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 PURAQ00577 322 aaKnown RBP5.68□□□□□ -1.5
VPS29-205ENST00000548539 TMEM177Q53S58 311 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 FAM47CQ5HY64 1035 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 FAM126BQ8IXS8 530 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 OR2W6PQ8NHA6 318 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 Q8TCH9 128 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 PLEKHO2Q8TD55 490 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 SEC14L1Q92503 715 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 FBXW5Q969U6 566 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 TMEM169Q96HH4 297 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 YTHDC1Q96MU7 727 aaKnown RBP5.68□□□□□ -1.5
VPS29-205ENST00000548539 CATSPERZQ9NTU4 200 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 CBLCQ9ULV8 474 aa5.68□□□□□ -1.5
VPS29-205ENST00000548539 KCNK3O14649 394 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 NPTXRO95502 500 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 COL6A2P12110 1019 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 CPEP16870 476 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms