RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 RAVER2Q9HCJ3 691 aaKnown RBP9.34□□□□□ -0.91
CLIP1-218ENST00000545889 ANAPC4Q9UJX5 808 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 HPS5Q9UPZ3 1129 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 WDR19Q8NEZ3 1342 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 A0A087WUV0 522 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-218ENST00000545889 CCL15-CCL14A0A0B4J2E2 113 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 NDUFB10O96000 172 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 RPSAP08865 295 aaKnown RBP9.34□□□□□ -0.91
CLIP1-218ENST00000545889 ALDH3A1P30838 453 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 PLA2G4AP47712 749 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 CCL15Q16663 113 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 RNF219Q5W0B1 726 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-218ENST00000545889 NME8Q8N427 588 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 RBM46Q8TBY0 533 aaKnown RBP9.34□□□□□ -0.91
CLIP1-218ENST00000545889 NSUN6Q8TEA1 469 aaKnown RBP9.34□□□□□ -0.91
CLIP1-218ENST00000545889 SGSM3Q96HU1 749 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 ZNF446Q9NWS9 450 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 ATP8B3O60423 1300 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 USP17L15C9J2P7 530 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 USP17L13C9JLJ4 530 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 USP17L11C9JVI0 530 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 USP17L18D6R9N7 530 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 USP17L22D6RA61 530 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 USP17L17D6RBQ6 530 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 USP17L19D6RCP7 530 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 USP17L20D6RJB6 530 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 HSF2BPO75031 334 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 N4BP1O75113 896 aaKnown RBP9.34□□□□□ -0.91
CLIP1-218ENST00000545889 CTDNEP1O95476 244 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 STAT1P42224 750 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 ITIH3Q06033 890 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 PPP2R3AQ06190 1150 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 USP17L24Q0WX57 530 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 RESTQ13127 1097 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 HADHQ16836 314 aaKnown RBP9.34□□□□□ -0.91
CLIP1-218ENST00000545889 FAM117BQ6P1L5 589 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 USP17L6PQ6QN14 398 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 URGCPQ8TCY9 931 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 TOPORSQ9NS56 1045 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-218ENST00000545889 PCDHA7Q9UN72 937 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 KIAA1024Q9UPX6 916 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 KLRG2A4D1S0 409 aaPredicted RBP9.33□□□□□ -0.92
CLIP1-218ENST00000545889 VIL1P09327 827 aaKnown RBP9.33□□□□□ -0.92
CLIP1-218ENST00000545889 MYO1EQ12965 1108 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 GRM4Q14833 912 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 FAM26FQ5R3K3 315 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 CCDC122Q5T0U0 273 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 FBXW10Q5XX13 1052 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 CLEC17AQ6ZS10 378 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 ARMCX2Q7L311 632 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 YAF2Q8IY57 180 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 MRFAP1L1Q96HT8 127 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 SMC6Q96SB8 1091 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 STMN4Q9H169 189 aaPredicted RBP9.33□□□□□ -0.92
CLIP1-218ENST00000545889 IFNKQ9P0W0 207 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 MOSPD1Q9UJG1 213 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 PCDHB6Q9Y5E3 794 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 SMIM23A6NLE4 172 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 NFKBIAP25963 317 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 MTMR2Q13614 643 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 RBBP5Q15291 538 aaKnown RBP9.33□□□□□ -0.92
CLIP1-218ENST00000545889 NUDT18Q6ZVK8 323 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 CCDC89Q8N998 374 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 FAM163AQ96GL9 167 aaPredicted RBP9.33□□□□□ -0.92
CLIP1-218ENST00000545889 TRIM7Q9C029 511 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 NXF1Q9UBU9 619 aaKnown RBP9.33□□□□□ -0.92
CLIP1-218ENST00000545889 ASB14A6NK59 587 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 K7ERI5 159 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 NFKBIEO00221 500 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 IFNB1P01574 187 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 RHOXF2BP0C7M4 288 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 GCFC2P16383 781 aaKnown RBP9.33□□□□□ -0.92
CLIP1-218ENST00000545889 TROAPQ12815 778 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 SRGAP1Q7Z6B7 1085 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 DAAM2Q86T65 1068 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 ADGRF4Q8IZF3 695 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 TBCKQ8TEA7 893 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 FAM167AQ96KS9 214 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 RHOXF2Q9BQY4 288 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 NLRC4Q9NPP4 1024 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 FAM198AQ9UFP1 575 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 PCDHA4Q9UN74 947 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 FAN1Q9Y2M0 1017 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 LAMB4A4D0S4 1761 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 ZNF233A6NK53 670 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 CAND2O75155 1236 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 ZNF202O95125 648 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 FDPSP14324 419 aaKnown RBP9.33□□□□□ -0.92
CLIP1-218ENST00000545889 MAN1A1P33908 653 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 CCT5P48643 541 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 QRICH1Q2TAL8 776 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 GPIHBP1Q8IV16 184 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 LRRC8AQ8IWT6 810 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 LZTFL1Q9NQ48 299 aa9.33□□□□□ -0.92
CLIP1-218ENST00000545889 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.33□□□□□ -0.92
CLIP1-218ENST00000545889 GNA14O95837 355 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 MAP1SQ66K74 1059 aaPredicted RBP9.32□□□□□ -0.92
CLIP1-218ENST00000545889 RCSD1Q6JBY9 416 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 MLKLQ8NB16 471 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 GIMAP8Q8ND71 665 aaPredicted RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms